View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8972_low_7 (Length: 588)
Name: NF8972_low_7
Description: NF8972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8972_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 46756004 - 46756354
Alignment:
| Q |
1 |
gctgaaagagaagctttcttataaggtggttagttaactgtttctacatttttatgttcacataacataacatgagggttaaatcgaatgttatttcatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
46756004 |
gctgatagagaagctttcttataaggtggttagttaactgtttctacatttttatgttcacataacat-----gagggttaaatagaatgttatttcatt |
46756098 |
T |
|
| Q |
101 |
tcgtgattgtcctcgaaggttaaataaagacttgtaatggacaactacataatagtgtggtcgt--ttgtacttggagagcatgtattatatatcaacta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46756099 |
tcgtgattgtcctcgaaggttaaataaagacttgtaatggacaactacataatagtgtggtcgtgtttgtacttggagagcatgtattatatatcaacta |
46756198 |
T |
|
| Q |
199 |
taagtgaaactcgacttaattggaaatacataatatagctttatttcttcgtttattatttatgcatataaccgagttgtgtactgtaaaatacatgtta |
298 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46756199 |
taagtgaaacttgacttaattggaaatacataatatagctttatttcttcgtttattatttatgcatataactgagttgtgtactgtaaaatacatgtta |
46756298 |
T |
|
| Q |
299 |
ctattatattatttgggtttaaatttaataagtcgttctctaaatttatggggtga |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46756299 |
ctattatattatttgggtttaaatttaataagtcgttctctaaatttatggggtga |
46756354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 390 - 494
Target Start/End: Original strand, 46756423 - 46756527
Alignment:
| Q |
390 |
caatttatatatgtcataatttacttccccctttttatgcgaacaattgtaaatgatataatcctgatttttggagaatcaatgttgctgatattgtaac |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46756423 |
caatttatatatgtcataatttacttccccttttttatgcgaacaattgtaaatgatataatcctgatttttggagaatcaatgttgctgatattgtaac |
46756522 |
T |
|
| Q |
490 |
ccatc |
494 |
Q |
| |
|
||||| |
|
|
| T |
46756523 |
ccatc |
46756527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 507 - 567
Target Start/End: Original strand, 46756650 - 46756710
Alignment:
| Q |
507 |
ttcgacgcctctgatgtgactaaaggggtatcccgtgtttataagggatgacgctcccttt |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
46756650 |
ttcgacgcctctgatgtgactaaaggggtattccgtgtttgtaagggatgacgctcccttt |
46756710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University