View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_high_1 (Length: 659)

Name: NF8973_high_1
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_high_1
NF8973_high_1
[»] chr5 (25 HSPs)
chr5 (14-645)||(41286351-41286988)
chr5 (23-182)||(41316351-41316510)
chr5 (514-640)||(41324755-41324881)
chr5 (23-192)||(31188371-31188540)
chr5 (26-178)||(41328321-41328473)
chr5 (542-641)||(31225598-31225697)
chr5 (23-181)||(41310611-41310769)
chr5 (23-181)||(41324420-41324578)
chr5 (24-178)||(41332332-41332486)
chr5 (23-128)||(31225273-31225378)
chr5 (553-645)||(31188077-31188169)
chr5 (514-638)||(41328732-41328856)
chr5 (67-175)||(41337304-41337412)
chr5 (522-645)||(41337480-41337603)
chr5 (514-626)||(41332665-41332777)
chr5 (530-645)||(41431922-41432037)
chr5 (570-640)||(14235867-14235937)
chr5 (552-645)||(31178014-31178107)
chr5 (514-645)||(41316691-41316822)
chr5 (23-116)||(31178402-31178495)
chr5 (568-645)||(41366898-41366975)
chr5 (23-181)||(41366511-41366666)
chr5 (589-645)||(41310967-41311023)
chr5 (514-565)||(41310916-41310967)
chr5 (197-264)||(4209918-4209986)
[»] chr4 (2 HSPs)
chr4 (529-640)||(17248899-17249010)
chr4 (69-181)||(17249070-17249182)
[»] chr6 (3 HSPs)
chr6 (246-392)||(2401881-2402029)
chr6 (199-264)||(2401804-2401870)
chr6 (201-264)||(17545311-17545375)
[»] chr7 (3 HSPs)
chr7 (297-378)||(42424446-42424528)
chr7 (344-391)||(42424192-42424239)
chr7 (204-264)||(42424577-42424638)
[»] chr1 (1 HSPs)
chr1 (292-371)||(43473281-43473360)
[»] chr8 (2 HSPs)
chr8 (246-371)||(5021746-5021862)
chr8 (198-270)||(35213373-35213446)
[»] chr3 (3 HSPs)
chr3 (277-386)||(8895911-8896019)
chr3 (197-268)||(31311326-31311398)
chr3 (202-262)||(55378742-55378803)
[»] chr2 (1 HSPs)
chr2 (199-264)||(27277547-27277613)


Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 14 - 645
Target Start/End: Original strand, 41286351 - 41286988
Alignment:
Q  14 agaccaaacttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacagg 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41286351 agaccaaacttgccagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacagg 41286450  T
Q  114 aaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286451 aaagtgagcactcataacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 41286550  T
Q  214 gtttttgatcccctaaatatacatactattgattttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgtt 313  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41286551 gcttttgatcccctaaatatacatactattgattttagtcctcctaaaattctccatctatggaattggtccctgctgttaactcctctttaacggtgtt 41286650  T
Q  314 gatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttgctgacgtggacttttttaaagatttcctgaagaag-- 411  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  41286651 gatgtggcaacgccacatgtgcataccaaatgacgtggcactgccacatggatttttactttgctgacgtggatttttttaaagatttcctgaagaagat 41286750  T
Q  412 -aaaaataatattatcttaactaatcattgtatttggagagaatataaaaattataacttattttttagctgtgatgtgtggaagg----gggttagatg 506  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  41286751 caaaaataatattatcttaactaatcattgtatttggagagaatataaaaattataacttattttttagctgtgatgtgtggaagggtgtgggttagatg 41286850  T
Q  507 ataaattatgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatcca 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41286851 ataaattatgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgagggatgtctgagatggtaaagaatcca 41286950  T
Q  607 aaggtgatggaagaagcacaagctgaggtaagaaaagtg 645  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  41286951 aaggtgatggaa-aagcacaagctgaggtaagaagagtg 41286988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 41316351 - 41316510
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||||||||| || ||||| ||||| | ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | | |    
T  41316351 ttgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatc 41316450  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaac 182  Q
    ||||||||||||| || |||||||| ||| ||||| || ||||||||||||||| |||||    
T  41316451 actcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaac 41316510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 514 - 640
Target Start/End: Original strand, 41324755 - 41324881
Alignment:
Q  514 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtga 613  Q
    ||||||||||||||  ||||| | |||  |||||||  |||||||||||||  | |||||||||||| ||| ||||||||||||||||||||||||||||    
T  41324755 atgttaatccatttgtaggacatattcgatgctggtaccgaaacatcgtcaacgactgtgttatgggcgatatctgagatggtaaagaatccaaaggtga 41324854  T
Q  614 tggaagaagcacaagctgaggtaagaa 640  Q
    |||||||||||||||||||||||||||    
T  41324855 tggaagaagcacaagctgaggtaagaa 41324881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 31188540 - 31188371
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||| ||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||| |    
T  31188540 ttgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatc 31188441  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgtt 192  Q
    |||||||  |||| || |||||| | ||| | |||||| |||| | |||| ||||||||| || ||||||    
T  31188440 actcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaaccaaacatgtt 31188371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 41328321 - 41328473
Alignment:
Q  26 caagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcact 125  Q
    ||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||||    
T  41328321 caagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcact 41328420  T
Q  126 cacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 178  Q
    || ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41328421 cagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 542 - 641
Target Start/End: Original strand, 31225598 - 31225697
Alignment:
Q  542 ctgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaaa 641  Q
    |||||||| ||||||| || ||||||| ||||||||||||||| ||||||||||||||||| |||||| | ||||| |||||||||||||| ||||||||    
T  31225598 ctgctggtagcgaaacgtcatcaggggttgtgttatgggggatatctgagatggtaaagaacccaaagataatggaggaagcacaagctgaagtaagaaa 31225697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 41310611 - 41310769
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||||||||| || ||||| ||||| | || || |||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||| | | |    
T  41310611 ttgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatc 41310710  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 181  Q
    ||||| ||||||| || || ||||| ||| | ||| || |||||||||| |||||||||    
T  41310711 actcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 41324420 - 41324578
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    ||||||||||| || || ||||| ||||| | ||||| |||||| ||||| || ||| |||||||  ||||||||||||||||||||||||||| | | |    
T  41324420 ttgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatc 41324519  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 181  Q
    ||||||||||||| || || ||||| ||| ||||  || ||||||||||||||| ||||    
T  41324520 actcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 41332332 - 41332486
Alignment:
Q  24 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 123  Q
    ||||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | |  |    
T  41332332 tgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatta 41332431  T
Q  124 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 178  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41332432 ctcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 31225273 - 31225378
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||| ||||| |||||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  31225273 ttgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatgagc 31225372  T
Q  123 actcac 128  Q
    ||||||    
T  31225373 actcac 31225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 553 - 645
Target Start/End: Complemental strand, 31188169 - 31188077
Alignment:
Q  553 gaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaaaagtg 645  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||| | |||||  ||||||||||||| ||||||||||||    
T  31188169 gaaacatcgtccggggctgtgctatgggggatatctgagatggtaaagaacccaaagataatggagaaagcacaagctgaagtaagaaaagtg 31188077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 514 - 638
Target Start/End: Original strand, 41328732 - 41328856
Alignment:
Q  514 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtga 613  Q
    ||||||||||||||  ||||| |||||  |||||||  |||||||||||||  || | ||||||||| ||||||||||||||| ||||| |||||||| |    
T  41328732 atgttaatccatttgtaggacatgttccttgctggtaccgaaacatcgtcacaggttctgttatgggcgatgtctgagatggtgaagaacccaaaggtaa 41328831  T
Q  614 tggaagaagcacaagctgaggtaag 638  Q
    ||||||||||||||| ||| |||||    
T  41328832 tggaagaagcacaagatgaagtaag 41328856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 41337304 - 41337412
Alignment:
Q  67 aagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatc 166  Q
    |||||| |||||||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||||||| ||| ||||| |||||||     
T  41337304 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcatt 41337403  T
Q  167 caggttagt 175  Q
    |||||||||    
T  41337404 caggttagt 41337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 522 - 645
Target Start/End: Original strand, 41337480 - 41337603
Alignment:
Q  522 ccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaa 621  Q
    |||||| ||||||||||||| ||||||  ||||||||||||||||   |||| |||||| |||||| |||||| ||||||| ||||  || |||||||||    
T  41337480 ccatttgcaggacttgttcattgctggcagcgaaacatcgtcaggaattgtgctatgggcgatgtcggagatgataaagaacccaatagtaatggaagaa 41337579  T
Q  622 gcacaagctgaggtaagaaaagtg 645  Q
    ||||||| ||||||||||| ||||    
T  41337580 gcacaagttgaggtaagaagagtg 41337603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 514 - 626
Target Start/End: Original strand, 41332665 - 41332777
Alignment:
Q  514 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtga 613  Q
    ||||||||||||||  ||||  |||||| |||||||  |||||||||||||| ||   ||||||||| ||||||||||||||||||||| ||||||||      
T  41332665 atgttaatccatttgtaggatatgttcattgctggtaccgaaacatcgtcagaggtattgttatgggcgatgtctgagatggtaaagaacccaaaggtat 41332764  T
Q  614 tggaagaagcaca 626  Q
    |||||||||||||    
T  41332765 tggaagaagcaca 41332777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 530 - 645
Target Start/End: Original strand, 41431922 - 41432037
Alignment:
Q  530 aggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaagcacaagc 629  Q
    ||||||||||  ||||||||   ||||| ||||||| || ||| ||||||| ||||||||||||||  ||||| || || ||||||||||||||||||||    
T  41431922 aggacttgttttctgctggtactgaaacttcgtcagtggttgtcttatgggcgatgtctgagatggcgaagaacccgaatgtgatggaagaagcacaagc 41432021  T
Q  630 tgaggtaagaaaagtg 645  Q
    ||||||||||| ||||    
T  41432022 tgaggtaagaagagtg 41432037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 570 - 640
Target Start/End: Original strand, 14235867 - 14235937
Alignment:
Q  570 tgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaa 640  Q
    |||||||| ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  14235867 tgtgttattggggatgtctgagattgtaaagaaccctagggtgatggaagaagcacaagctgaggtaagaa 14235937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 552 - 645
Target Start/End: Complemental strand, 31178107 - 31178014
Alignment:
Q  552 cgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaaaagtg 645  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||| ||||||| |||||| | ||| | |||||||||||||| ||||||||||||    
T  31178107 cgaaacatcatcaggagttgtgttatgggggatatctgagatgataaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaagtg 31178014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 514 - 645
Target Start/End: Original strand, 41316691 - 41316822
Alignment:
Q  514 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtga 613  Q
    |||||||||||||| |||||| ||||   |||||||   ||||||||||||| ||||||| | |||| |||||||| ||||||||| ||  |||| || |    
T  41316691 atgttaatccatttgcaggacatgtttggtgctggtactgaaacatcgtcagaggctgtgatttgggcgatgtctgcgatggtaaaaaactcaaatgtaa 41316790  T
Q  614 tggaagaagcacaagctgaggtaagaaaagtg 645  Q
    ||||| ||||||||||||| ||||||| ||||    
T  41316791 tggaacaagcacaagctgaagtaagaagagtg 41316822  T

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Target: chr5; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 31178495 - 31178402
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaa 116  Q
    |||||||| ||| | |||||||||||||  | ||||| |||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||    
T  31178495 ttgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaa 31178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 568 - 645
Target Start/End: Original strand, 41366898 - 41366975
Alignment:
Q  568 gctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaaaagtg 645  Q
    ||||||||||||  |||||||||||||||||||||||| | ||| ||||||| |||||||| ||||||||||| ||||    
T  41366898 gctgtgttatggacgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaagttgaggtaagaagagtg 41366975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 41366511 - 41366666
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||| ||||| |||||||| ||||| ||||||| | |||  || ||  |||| ||||||||  |||||||||||||||||||||  | ||   | |    
T  41366511 ttgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atc 41366607  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 181  Q
    ||||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||||    
T  41366608 actcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 645
Target Start/End: Original strand, 41310967 - 41311023
Alignment:
Q  589 gagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaaaagtg 645  Q
    |||||||||||||| |||||||| |||||||||||||||| ||| ||||||| ||||    
T  41310967 gagatggtaaagaacccaaaggtaatggaagaagcacaagttgaagtaagaagagtg 41311023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 565
Target Start/End: Original strand, 41310916 - 41310967
Alignment:
Q  514 atgttaatccatttacaggacttgttcactgctggtggcgaaacatcgtcag 565  Q
    ||||||||||||||  ||||| ||||||||||||||  ||||||||||||||    
T  41310916 atgttaatccatttgtaggacatgttcactgctggtaccgaaacatcgtcag 41310967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 4209918 - 4209986
Alignment:
Q  197 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    |||| |||||||| ||| |||||||||||  |||||||||| ||| || ||||||||||| ||||||||    
T  4209918 atttaagggttaaatatatttttgatccctataaatatacaaactttttattttagtccctctaaaatt 4209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 529 - 640
Target Start/End: Complemental strand, 17249010 - 17248899
Alignment:
Q  529 caggacttgttcactgctggtggcgaaacatcgtcaggggctgtgttatgggggatgtctgagatggtaaagaatccaaaggtgatggaagaagcacaag 628  Q
    |||||| ||||  |||||||| ||||||||||||| |||  |||||||||||| |||||||||||  |||| || |||||||||||||||| ||||||||    
T  17249010 caggacatgtttgctgctggtagcgaaacatcgtctgggattgtgttatggggaatgtctgagataataaaaaacccaaaggtgatggaagcagcacaag 17248911  T
Q  629 ctgaggtaagaa 640  Q
    ||||||||||||    
T  17248910 ctgaggtaagaa 17248899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 17249182 - 17249070
Alignment:
Q  69 gcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatcca 168  Q
    |||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||  || ||||| || | ||||||||||| ||| ||||| || |||||||    
T  17249182 gcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatcca 17249083  T
Q  169 ggttagtctacaa 181  Q
    |||||||||||||    
T  17249082 ggttagtctacaa 17249070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 246 - 392
Target Start/End: Original strand, 2401881 - 2402029
Alignment:
Q  246 ttttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatg 345  Q
    |||||||||| |||||||||| ||| |||| |||||||||||||| |||||| |||||||| | || | |  ||| ||| ||||||||||||||||||||    
T  2401881 ttttagtccctctaaaattcttcatttatgaaattggtccctgctgttaacttctctttaatgttgctaacatgggaacaccacatgtgcataccaaatg 2401980  T
Q  346 atgtggcactgccacatgga---tttttactttgctgacgtggacttttt 392  Q
    | |||||| | |||| || |   ||||||||||||||||||||| |||||    
T  2401981 acgtggcagt-ccacgtgaattttttttactttgctgacgtggaattttt 2402029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 2401804 - 2401870
Alignment:
Q  199 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    |||||||||||||||||||||  ||||| |||||||||  | | |||||||||| ||||||||||||    
T  2401804 tttagggttaattatgttttttgtccccttaaatataccaattgttgattttagcccccctaaaatt 2401870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 17545375 - 17545311
Alignment:
Q  201 tagggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaatt 264  Q
    ||||||||| |||||||||||||||  |||||||||| ||| ||  |||||||||| ||||||||    
T  17545375 tagggttaaatatgtttttgatccctataaatatacaaactttttgttttagtccctctaaaatt 17545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 42424528 - 42424446
Alignment:
Q  297 tcctctttaacggtg-ttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttgct 378  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||||  ||||| |||||| |||||||||||||||||    
T  42424528 tcctctttaaaggtgcttgacgtggcaacgccacatgtgcataccaaatgacatggcattgccacgtggatttttactttgct 42424446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 42424192 - 42424239
Alignment:
Q  344 tgatgtggcactgccacatggatttttactttgctgacgtggactttt 391  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  42424192 tgatgtggcactgctacatggatttttactttgctggcgtggaatttt 42424239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 42424638 - 42424577
Alignment:
Q  204 ggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    |||||||||| |||||||||||| ||||||||   ||| ||||||||||||| |||||||||    
T  42424638 ggttaattatatttttgatccccctaaatatatcaactgttgattttagtcctcctaaaatt 42424577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 43473360 - 43473281
Alignment:
Q  292 ttaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggattttta 371  Q
    ||||||||||||||||| |  ||||||||||| ||||||||||||||| ||||||||||||| ||| || ||||||||||    
T  43473360 ttaactcctctttaacgatcctgatgtggcaatgccacatgtgcatactaaatgatgtggcaatgctacgtggattttta 43473281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 5021862 - 5021746
Alignment:
Q  246 ttttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatg 345  Q
    ||||||||| || ||||||||| || ||||||||||||| ||||| |||||||||||||||||||| ||        |||||||||||||||||||||||    
T  5021862 ttttagtcctcc-aaaattctctatttatggaattggtctctgctgttaactcctctttaacggtgctg--------acgccacatgtgcataccaaatg 5021772  T
Q  346 atgtggcactgccacatggattttta 371  Q
    |   |||| |||||| ||||||||||    
T  5021771 actgggcattgccacgtggattttta 5021746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 35213373 - 35213446
Alignment:
Q  198 ttttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctccat 270  Q
    |||||||||||| |||||||||| |||   |||||||||| ||| || ||||||||||| |||||||| |||||    
T  35213373 ttttagggttaaatatgtttttggtccttataaatatacaaactttttattttagtccctctaaaattttccat 35213446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 8896019 - 8895911
Alignment:
Q  277 aattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttg 376  Q
    |||| |||||| || |||||||||||| |||| ||||||  || |||  ||| ||||||||||||||||||||||||||||||| || | ||| ||| ||    
T  8896019 aattagtccctactgttaactcctctt-aacgatgttgacatgacaataccatatgtgcataccaaatgatgtggcactgccacgtgaaatttgactgtg 8895921  T
Q  377 ctgacgtgga 386  Q
    ||||||||||    
T  8895920 ctgacgtgga 8895911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 31311398 - 31311326
Alignment:
Q  197 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctcc 268  Q
    ||||||||||||| |||||||||| ||||  |||||||||| ||| || ||||||||||| ||||||||||||    
T  31311398 attttagggttaaatatgtttttggtccctataaatatacaaacttttcattttagtccctctaaaattctcc 31311326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 55378742 - 55378803
Alignment:
Q  202 agggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaa 262  Q
    |||||||| |||||||||||||||  |||||||||| ||| || ||||||||||| ||||||    
T  55378742 agggttaaatatgtttttgatccctataaatatacaaacttttcattttagtccctctaaaa 55378803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 27277547 - 27277613
Alignment:
Q  199 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    ||||||||||| |||||||||| ||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  27277547 tttagggttaaatatgtttttggtccccataaatatacaaacttttcgttttagtccctctaaaatt 27277613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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