View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_high_12 (Length: 379)

Name: NF8973_high_12
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_high_12
NF8973_high_12
[»] chr4 (2 HSPs)
chr4 (1-367)||(36005911-36006268)
chr4 (1-167)||(36009406-36009568)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 36006268 - 36005911
Alignment:
Q  1 gaatgagtgcaaaaattagagcaaagctgattttagtaaacttggccattcttctcaattcttccaaacccttttgattaattatggttttaatgttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36006268 gaatgagtgcaaaaattagagcaaagctgattttagtaaacttggccattcttctcaattcttccaaacccttttaattaattatggttttaatgttgta 36006169  T
Q  101 agttgtgttttttagacttttggacttcggtttatatagaagctaggaacccaatatgactatagacactagttttttgagatactatatatatggcgtt 200  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      |||||||||    
T  36006168 agttgtgtttttcagacttttagacttcagtttatatagaagctaggaacccaatatgactatagaaactagttttttgagatac------tatggcgtt 36006075  T
Q  201 ggatttaagaagaatgccggctcaagggcagcatatattggacacatttttggcattagattggatactatattactatgatattatatgatgtttactg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  36006074 ggatttaagaagaatgccggctcaagggcagcatatattggacacatttttggcattagattggatactatat---tatgatattatatgatgtttactg 36005978  T
Q  301 gtagccgcatctcgcatcttatcttaatgctatatcaatgtgtcatgtcatatacgatgatgcttct 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36005977 gtagccgcatctcgcatcttatcttaatgctatatcaatgtgtcatgtcatatacgatgatgcttct 36005911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 36009568 - 36009406
Alignment:
Q  1 gaatgagtgcaaaaattagagcaaagctgattttagtaaacttggccattcttctcaattcttccaaacccttttgattaattatggttttaatgttgta 100  Q
    |||| |||| ||||||||||||||||  ||| |||||  |||| |||||||||||    | ||||||||| |||| | ||||||||||| |||||||||     
T  36009568 gaataagtgaaaaaattagagcaaagtagatgttagttgacttagccattcttct----tgttccaaacctttttaactaattatggttctaatgttgtg 36009473  T
Q  101 agttgtgttttttagacttttggacttcggtttatatagaagctaggaacccaatatgactatagac 167  Q
    |||||||||||||||||||| || |||| |||||||||| | ||| ||||| |||| ||||||||||    
T  36009472 agttgtgttttttagactttcgggcttcagtttatataggatctatgaacctaatacgactatagac 36009406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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