View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_high_13 (Length: 368)
Name: NF8973_high_13
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 32910344 - 32910000
Alignment:
| Q |
18 |
taaatattgtgaggaagtgattgcaggcattaacaagagtagaacagtggtgattagtgtaattaggaactccataatcttaattttttggactgagcaa |
117 |
Q |
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| T |
32910344 |
taaatattgtgaggaagtgattgcaggcattaacaagagtagaacagtggtgattagtgtaattaggaactccataatcttaattttttggactgagcaa |
32910245 |
T |
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| Q |
118 |
aataattctgaaattggtcacaggttaattaaccagcttaattatgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaat |
217 |
Q |
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| T |
32910244 |
aataattctgaaattggtcacaggttaattaaccagcttaatcatgtgtttgtcataattcacaacccactatgtataactggaaaaggtgaagatcaat |
32910145 |
T |
|
| Q |
218 |
taattatttaaaagacacgattaactggcgttttctttctcttaaattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcatggg |
317 |
Q |
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| T |
32910144 |
taattatttaaaagacacgattaacttgcgttttctttctcttaaattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcattgg |
32910045 |
T |
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| Q |
318 |
tgctctaattattatactacttagtatcttaatcttgatcgaatcaaca |
366 |
Q |
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| T |
32910044 |
tgctctaattattatac----tagtatcttaatcttgatcgaatcaaca |
32910000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 32932196 - 32932122
Alignment:
| Q |
18 |
taaatattgtgaggaagtgattgcaggcattaacaagagtagaacagtggtgattagtgtaattaggaactccat |
92 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| || |||||| || |||||||||||||||||||| |
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| T |
32932196 |
taaatattgggaggaagtgattgcaggcattaacaagagtaaaaaagtggtaatgagtgtaattaggaactccat |
32932122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 32932086 - 32931978
Alignment:
| Q |
161 |
atgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaattatttaaaagacacgattaactggcgttttctttctctt |
260 |
Q |
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||||||| || || |||||||| ||||||||||||| |||||||||||||||| || |||| |||||| | || ||||| || | |||||||||||||| |
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| T |
32932086 |
atgtgttggttatgattcacaatccactatgtataaatggaaaaagtgaagatgaaataataatttaagaaacgtgattatctcgtgttttctttctctt |
32931987 |
T |
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| Q |
261 |
aaattatgt |
269 |
Q |
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||||||||| |
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| T |
32931986 |
aaattatgt |
32931978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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