View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_high_20 (Length: 309)
Name: NF8973_high_20
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 23315367 - 23315175
Alignment:
| Q |
1 |
cacatttagtatgaaaagaaaaggcatgcttacaccatcctcttttgtcaacagcagctaaccattcatgtgccttgggattagcttccttcggcaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23315367 |
cacatttagtatgaaaagaaaaggcatgcttacaccatccccttttgtcaacagcagctaaccattcatgtgccttgggattagcttccttcagcaactg |
23315268 |
T |
|
| Q |
101 |
catcttttcttcccaagcttcaacataagtagttttggcagcacccatcatcaagtccctaattagtgtacctccaccaaacttcttcttgaa |
193 |
Q |
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| T |
23315267 |
catcttttcttcccaagcttcaacataagtagccttggcagcacccatcattaagtccctaattagtgtacctccaccaaacttcttcttgaa |
23315175 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 14798535 - 14798596
Alignment:
| Q |
129 |
gtagttttggcagcacccatcatcaagtccctaattagtgtacctccaccaaacttcttctt |
190 |
Q |
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| T |
14798535 |
gtagtcttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttctt |
14798596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 15245527 - 15245588
Alignment:
| Q |
129 |
gtagttttggcagcacccatcatcaagtccctaattagtgtacctccaccaaacttcttctt |
190 |
Q |
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| T |
15245527 |
gtagtcttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttctt |
15245588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 14632846 - 14632795
Alignment:
| Q |
139 |
cagcacccatcatcaagtccctaattagtgtacctccaccaaacttcttctt |
190 |
Q |
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| T |
14632846 |
cagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttctt |
14632795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 46240606 - 46240542
Alignment:
| Q |
129 |
gtagttttggcagcacccatcatcaagtccctaattagtgtacctccaccaaacttcttcttgaa |
193 |
Q |
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|||| ||| ||||| ||||||||||||||||| || || |||||||||||||| ||||||||||| |
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| T |
46240606 |
gtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaa |
46240542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 26268869 - 26268814
Alignment:
| Q |
135 |
ttggcagcacccatcatcaagtccctaattagtgtacctccaccaaacttcttctt |
190 |
Q |
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||||||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| |
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| T |
26268869 |
ttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttctt |
26268814 |
T |
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