View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_high_28 (Length: 256)
Name: NF8973_high_28
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_high_28 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 1960178 - 1960335
Alignment:
| Q |
100 |
aaagaaaccacgcttaactgtaactgatagcaaatagagttggttt-gaggtagaattcaaggtaaactttatgagtaaggtcatctaagtttattagac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
1960178 |
aaagaaaccacgcttaactgtaactgatagcaaatagagttggtttcgaggtagaattcaaggttaactttatgagcaaggtcatctaagtttattagac |
1960277 |
T |
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| Q |
199 |
atgtagaaattggtgtttttgagttacaatgaggaaaggaagccctgccagaatccat |
256 |
Q |
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| T |
1960278 |
atgtagaaattggtgtttttgagttacaatgaggaaaggaagtcctgccagaatccat |
1960335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 1960139 - 1960180
Alignment:
| Q |
11 |
agtttcgtgtttgaatacatgttttctgtacaaatccacaaa |
52 |
Q |
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| T |
1960139 |
agtttcgtgtttgaaggcatgttttctgcacaaatccacaaa |
1960180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 254
Target Start/End: Original strand, 39749170 - 39749326
Alignment:
| Q |
99 |
aaaagaaaccacgcttaactgtaactgatagcaaatagagttggtttga-ggtagaattcaaggtaaactttatgagtaaggtcatctaagtttattaga |
197 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
39749170 |
aaaagaaaccacacttaactgtaactgatagcaaatagagttggtttcaaggtagaattcaaggtaaactttatgagcaaggtcatctaagtttcttagg |
39749269 |
T |
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| Q |
198 |
catgtagaaattggtgtttttgagttacaatgaggaaaggaagccctgccagaatcc |
254 |
Q |
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| T |
39749270 |
catgaagaaattgatgttttcgagtcacaaagaggaaacgaagccctgccagaatcc |
39749326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 27088474 - 27088617
Alignment:
| Q |
112 |
cttaactgtaactgatagcaaatagagttggttt-gaggtagaattcaaggtaaactttatgagtaaggtcatctaagtttattagacatgtagaaattg |
210 |
Q |
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||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||| ||||||| ||| || ||||||||| |||| ||||| | ||||| |
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| T |
27088474 |
cttaactgtaattgataacaaatggagttggtttcgaggtagaattcaaggtaaaccttatgagcaagatcgtctaagtttcttaggcatgttgcaattg |
27088573 |
T |
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| Q |
211 |
gtgtttttgagttacaatgaggaaaggaagccctgccagaatcc |
254 |
Q |
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|||||| || || |||| ||||||||||| |||| ||||||||| |
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| T |
27088574 |
gtgtttctgcgtcacaacgaggaaaggaaacccttccagaatcc |
27088617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 27019943 - 27019800
Alignment:
| Q |
112 |
cttaactgtaactgatagcaaatagagttggttt-gaggtagaattcaaggtaaactttatgagtaaggtcatctaagtttattagacatgtagaaattg |
210 |
Q |
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||||||||||| ||||| ||||| ||||| |||| ||||||||||||||||||||| ||||||| ||| || ||||||||| |||| ||||| | ||||| |
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| T |
27019943 |
cttaactgtaattgataacaaatggagtttgtttcgaggtagaattcaaggtaaaccttatgagcaagatcgtctaagtttcttaggcatgttgcaattg |
27019844 |
T |
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| Q |
211 |
gtgtttttgagttacaatgaggaaaggaagccctgccagaatcc |
254 |
Q |
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| T |
27019843 |
atgtttctgcgtcacagcgaggaaaggaaacccttccagaatcc |
27019800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 26978211 - 26978068
Alignment:
| Q |
112 |
cttaactgtaactgatagcaaatagagttggttt-gaggtagaattcaaggtaaactttatgagtaaggtcatctaagtttattagacatgtagaaattg |
210 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| | || || |||||| | || ||||| | ||||| |
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| T |
26978211 |
cttaactgtaattgataacaaatagagttggtttcgaggtagaactcaaggtaaaccttatgagcgaaatcgtccaagtttctaaggcatgtcgcaattg |
26978112 |
T |
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| Q |
211 |
gtgtttttgagttacaatgaggaaaggaagccctgccagaatcc |
254 |
Q |
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|||||| | || |||||||||||||||| |||| ||||||||| |
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| T |
26978111 |
atgttttcgtgtcacaatgaggaaaggaaacccttccagaatcc |
26978068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 11631784 - 11631641
Alignment:
| Q |
112 |
cttaactgtaactgatagcaaatagagttggttt-gaggtagaattcaaggtaaactttatgagtaaggtcatctaagtttattagacatgtagaaattg |
210 |
Q |
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||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||| | | ||||| |
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| T |
11631784 |
cttaactgtaattgatagcaaattgagttggtttcgaggtagaattcaaggtaaaccttatgagcaaggtcatctaagtttcttaagcattttgcaattg |
11631685 |
T |
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| Q |
211 |
gtgtttttgagttacaatgaggaaaggaagccctgccagaatcc |
254 |
Q |
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| T |
11631684 |
atgtttttgagtcacaatgaggaaaggaatcccttccagaatcc |
11631641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 34680608 - 34680465
Alignment:
| Q |
112 |
cttaactgtaactgatagcaaatagagttggttt-gaggtagaattcaaggtaaactttatgagtaaggtcatctaagtttattagacatgtagaaattg |
210 |
Q |
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||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||| || ||||||||| |||| ||||| ||||| |
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| T |
34680608 |
cttaactgtaattgataacaaatagagttggtttcgaggtagaattcaaggtaaaccttatgagcaagatcgtctaagtttcttaggcatgtcacaattg |
34680509 |
T |
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| Q |
211 |
gtgtttttgagttacaatgaggaaaggaagccctgccagaatcc |
254 |
Q |
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|||||| | || |||||||||||||||| |||| ||||||||| |
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| T |
34680508 |
atgttttcgtgtcacaatgaggaaaggaaacccttccagaatcc |
34680465 |
T |
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