View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_high_4 (Length: 600)
Name: NF8973_high_4
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_high_4 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 49971870 - 49971766
Alignment:
| Q |
34 |
ttatgcagggcacattgggaggacccagatattgttccggaatgtcttttatagcatcttacaaagtgttcacttaaaattgacagcagtctaagttgga |
133 |
Q |
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| T |
49971870 |
ttatgcagggcacattgggaggacccagatattgttccgaaatgtcttttatcgcatcttacaaagtgttcacttaaaattgacagcagtctaagttgga |
49971771 |
T |
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| Q |
134 |
agttt |
138 |
Q |
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||||| |
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| T |
49971770 |
agttt |
49971766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 49971695 - 49971594
Alignment:
| Q |
161 |
tagatacagatgcaaaagaacaaatgttcatggaattatctttgtgcgcaaggaattcaacagtgtgtcaacttttatttatttgaatactgccacaggt |
260 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
49971695 |
tagatacagatgcaaaacaccaaatgttcatggaattatctttgtgcgcaaggaattcggcagtgtgtcaacttttatttatttgcatactgccacaggt |
49971596 |
T |
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| Q |
261 |
tc |
262 |
Q |
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|| |
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| T |
49971595 |
tc |
49971594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 2066 - 1999
Alignment:
| Q |
181 |
caaatgttcatggaattatctttgtgcgcaaggaattcaacagtgtgtcaacttttatttatttgaat |
248 |
Q |
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| T |
2066 |
caaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttgaat |
1999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 3612 - 3545
Alignment:
| Q |
181 |
caaatgttcatggaattatctttgtgcgcaaggaattcaacagtgtgtcaacttttatttatttgaat |
248 |
Q |
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||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
3612 |
caaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttgaat |
3545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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