View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_high_5 (Length: 538)

Name: NF8973_high_5
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_high_5
NF8973_high_5
[»] scaffold0251 (2 HSPs)
scaffold0251 (156-252)||(6115-6211)
scaffold0251 (423-488)||(5890-5955)
[»] chr6 (8 HSPs)
chr6 (156-232)||(33869154-33869231)
chr6 (156-232)||(15868300-15868377)
chr6 (156-214)||(14620438-14620496)
chr6 (161-220)||(5378609-5378668)
chr6 (31-91)||(14618996-14619055)
chr6 (161-201)||(19645593-19645633)
chr6 (34-91)||(14611156-14611212)
chr6 (56-91)||(14620573-14620608)
[»] chr4 (10 HSPs)
chr4 (156-220)||(18807597-18807662)
chr4 (161-220)||(52520478-52520537)
chr4 (156-212)||(25054147-25054204)
chr4 (156-209)||(11809985-11810039)
chr4 (160-226)||(31337731-31337797)
chr4 (31-91)||(24807496-24807556)
chr4 (56-91)||(52545225-52545260)
chr4 (24-91)||(51295235-51295302)
chr4 (56-90)||(8005866-8005900)
chr4 (161-201)||(23564968-23565008)
[»] chr3 (5 HSPs)
chr3 (156-230)||(4608910-4608984)
chr3 (56-91)||(35243952-35243987)
chr3 (56-91)||(35244126-35244161)
chr3 (156-212)||(26667233-26667288)
chr3 (59-91)||(41874471-41874503)
[»] chr5 (4 HSPs)
chr5 (156-220)||(4895943-4896008)
chr5 (156-232)||(10412162-10412238)
chr5 (156-214)||(25502247-25502306)
chr5 (160-214)||(33689795-33689849)
[»] chr1 (4 HSPs)
chr1 (156-220)||(3284423-3284487)
chr1 (156-227)||(9311943-9312014)
chr1 (24-87)||(902153-902215)
chr1 (56-89)||(33773164-33773197)
[»] chr2 (8 HSPs)
chr2 (161-214)||(25306654-25306707)
chr2 (156-204)||(17308534-17308582)
chr2 (156-205)||(45034996-45035045)
chr2 (172-214)||(1017077-1017120)
chr2 (56-91)||(25302771-25302806)
chr2 (56-90)||(41602412-41602446)
chr2 (59-88)||(25306769-25306798)
chr2 (161-213)||(18776681-18776733)
[»] chr7 (6 HSPs)
chr7 (156-204)||(21631465-21631513)
chr7 (161-213)||(44963050-44963101)
chr7 (161-220)||(28124883-28124942)
chr7 (24-91)||(34844124-34844192)
chr7 (161-220)||(4895461-4895520)
chr7 (156-226)||(9878382-9878452)
[»] scaffold0245 (1 HSPs)
scaffold0245 (156-219)||(11021-11084)
[»] chr8 (3 HSPs)
chr8 (156-205)||(35673522-35673571)
chr8 (156-209)||(1174945-1174999)
chr8 (159-220)||(10885454-10885517)
[»] scaffold0060 (1 HSPs)
scaffold0060 (156-214)||(9203-9261)
[»] scaffold0311 (1 HSPs)
scaffold0311 (170-213)||(14975-15018)
[»] scaffold0006 (1 HSPs)
scaffold0006 (56-91)||(39217-39252)


Alignment Details
Target: scaffold0251 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 6211 - 6115
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaacgattattcataatgaattgactaagtaaaat 252  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||  ||||||||||| ||||   ||||||||||||    
T  6211 agtccccctcaaactcaaaatggggaaaatcaccaatttgagtttgaaatacaacgaaattacattgattattcatactgaagaaactaagtaaaat 6115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 488
Target Start/End: Complemental strand, 5955 - 5890
Alignment:
Q  423 ttcttcttcgatcttcctaaaatctgcaaccagccttttcaaaaagtgattatacaaaacgcgatt 488  Q
    |||||||||  |||||||||||||||| |||||| ||  || || |||||| ||||||||||||||    
T  5955 ttcttcttctctcttcctaaaatctgccaccagctttcacacaaggtgattgtacaaaacgcgatt 5890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 33869231 - 33869154
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatg-aaattacaacgattattcata 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||    
T  33869231 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaaaacaatgaaaaatacaatgattattcata 33869154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 15868377 - 15868300
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatg-aaattacaacgattattcata 232  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||| |||||||||||    
T  15868377 agtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaaaacaatgaaaaatacaatgattattcata 15868300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 14620496 - 14620438
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaa 214  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||    
T  14620496 agtccccctcaaatttaaaatggggaaattcaccaatttgagtttgaaatacaatgaaa 14620438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 5378668 - 5378609
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaa 220  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||    
T  5378668 ccctcaaactcaaaatggggaaattcaccaatttgagattggaatacaatgaaagtacaa 5378609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 14619055 - 14618996
Alignment:
Q  31 tagatttgataaaagataaaagatgtgatacatgagtgttcctatatatagagtttagttg 91  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||    
T  14619055 tagatttgataaaagataat-gaaatgatacatgagtgttcctatatatagagtttagttg 14618996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 19645593 - 19645633
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttg 201  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  19645593 ccctcaaactcaaaatggggaaattcaccaatttgagtttg 19645633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 14611212 - 14611156
Alignment:
Q  34 atttgataaaagataaaagatgtgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||||||  ||  ||||||| ||||||||||||||||||||||||||||    
T  14611212 atttgataaaagataat-gaaatgatacacgagtgttcctatatatagagtttagttg 14611156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 14620608 - 14620573
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagttg 91  Q
    |||||||||||| |||||||||||||||||||||||    
T  14620608 tgatacatgagttttcctatatatagagtttagttg 14620573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 18807597 - 18807662
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaa-tttgagtttgaaatacaatgaaattacaa 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18807597 agtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaattacaa 18807662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 52520537 - 52520478
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaa 220  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||    
T  52520537 ccctcaaactcaaaatggggaaattcaccaatttgagcttggaatacaatgaaagtacaa 52520478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 25054204 - 25054147
Alignment:
Q  156 agtccccctcaaactcaaaat-gggaaaattcaccaatttgagtttgaaatacaatga 212  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  25054204 agtccccctcgaactcaaaattggggaaattcaccaatttgagtttgaaatacaatga 25054147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 11809985 - 11810039
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaa-tttgagtttgaaatacaa 209  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  11809985 agtccccctcaaacttaaaatggggaaattcaccaattttgagtttgaaatacaa 11810039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 31337797 - 31337731
Alignment:
Q  160 cccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaacgatta 226  Q
    ||||||||||||||| |||  |||||||||||||| |||||||||| |||||||| ||||| |||||    
T  31337797 cccctcaaactcaaagtggagaaattcaccaatttaagtttgaaatgcaatgaaaatacaatgatta 31337731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 24807556 - 24807496
Alignment:
Q  31 tagatttgataaaagataaaagatgtgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||||||| |  ||  ||||||||||||||||||||||||||| ||||||||    
T  24807556 tagatttgataaaagatgattgaaatgatacatgagtgttcctatatatagattttagttg 24807496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 52545225 - 52545260
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||||||||||||||||||||||||||    
T  52545225 tgatacatgagtgttcctatatatagagtttagttg 52545260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 51295302 - 51295235
Alignment:
Q  24 agtaaactagatttgataaaagataaaagatgtgatacatgagtgttcctatatatagagtttagttg 91  Q
    |||||||||||||||||||||| ||  |||  |||| ||| ||||||||||||||||  |||||||||    
T  51295302 agtaaactagatttgataaaaggtagtagaaatgatgcattagtgttcctatatataatgtttagttg 51295235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 8005900 - 8005866
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagtt 90  Q
    |||||||||||||||||||||||||||| ||||||    
T  8005900 tgatacatgagtgttcctatatatagagattagtt 8005866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 23564968 - 23565008
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttg 201  Q
    ||||||||||||||| ||| |||||| ||||||||||||||    
T  23564968 ccctcaaactcaaaacggggaaattcgccaatttgagtttg 23565008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 4608984 - 4608910
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaacgattattca 230  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| |||||||||    
T  4608984 agtccccctcaaactcaaaatggaaaaattcactaatttgagtttgagatactatgaaattacaatgattattca 4608910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 35243952 - 35243987
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||||||||||||||||||||||||||    
T  35243952 tgatacatgagtgttcctatatatagagtttagttg 35243987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 35244161 - 35244126
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||||||||||||||||||||||||||    
T  35244161 tgatacatgagtgttcctatatatagagtttagttg 35244126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 26667233 - 26667288
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttg-aaatacaatga 212  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||| |||||||||||    
T  26667233 agtccccctcaaactcaa--tggaaaaattcaccaatttgagtttgaaaatacaatga 26667288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 41874503 - 41874471
Alignment:
Q  59 tacatgagtgttcctatatatagagtttagttg 91  Q
    |||||||||||||||||||||||||||||||||    
T  41874503 tacatgagtgttcctatatatagagtttagttg 41874471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 4895943 - 4896008
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaat-gaaattacaa 220  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  4895943 agtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaatacaatggaaattacaa 4896008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 10412238 - 10412162
Alignment:
Q  156 agtccccctcaaactcaaaatgg-gaaaattcaccaatttgagtttgaaatacaatgaaattacaacgattattcata 232  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  10412238 agtccccctcaaactcaaaattgagaaaatt-accaatttgagtttgaaatacaatgaaattacaatgattattcata 10412162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 25502247 - 25502306
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttg-aaatacaatgaaa 214  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  25502247 agtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaaatacaatgaaa 25502306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 33689849 - 33689795
Alignment:
Q  160 cccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaa 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  33689849 cccctcaaactcaaaatggggaaattcaccaatttgagtttgaaacacaatgaaa 33689795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 3284487 - 3284423
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaa 220  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||    
T  3284487 agtccccctcaaactcaaagtgggaaaactcaccaatttgagtttgaaatacaatgaaaatacaa 3284423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 9312014 - 9311943
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaacgattat 227  Q
    ||||||||||||||||||| |||  || |||||||||||||||||||||||| |||||||||||| ||||||    
T  9312014 agtccccctcaaactcaaagtggagaatttcaccaatttgagtttgaaataccatgaaattacaatgattat 9311943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 902215 - 902153
Alignment:
Q  24 agtaaactagatttgataaaagataaaagatgtgatacatgagtgttcctatatatagagttta 87  Q
    |||||||||||||| | |||||||||  ||  ||||||||||||||||||||||| ||||||||    
T  902215 agtaaactagatttaacaaaagataat-gaaatgatacatgagtgttcctatatagagagttta 902153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 33773197 - 33773164
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagt 89  Q
    |||||||||||||||| |||||||||||||||||    
T  33773197 tgatacatgagtgttcttatatatagagtttagt 33773164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 25306707 - 25306654
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaa 214  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25306707 ccctcaaactcaaagtgggaaaattcaccaatttgagtttgaaatacaatgaaa 25306654  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 17308582 - 17308534
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaa 204  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17308582 agtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaa 17308534  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 45035045 - 45034996
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaat 205  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||    
T  45035045 agtccccctcaaactcaaaatagggaaattcaccaatttgagtttgaaat 45034996  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 1017120 - 1017077
Alignment:
Q  172 aaaatgggaaaattcaccaatttgagtttg-aaatacaatgaaa 214  Q
    |||||||| ||||||||||||||||||||| |||||||||||||    
T  1017120 aaaatggggaaattcaccaatttgagtttgaaaatacaatgaaa 1017077  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 25302806 - 25302771
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||| ||||||||||||||||||||||    
T  25302806 tgatacatgagtgatcctatatatagagtttagttg 25302771  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 41602446 - 41602412
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagtt 90  Q
    ||||||||||||||||||||||||||| |||||||    
T  41602446 tgatacatgagtgttcctatatatagaatttagtt 41602412  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 25306798 - 25306769
Alignment:
Q  59 tacatgagtgttcctatatatagagtttag 88  Q
    ||||||||||||||||||||||||||||||    
T  25306798 tacatgagtgttcctatatatagagtttag 25306769  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 18776733 - 18776681
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaa 213  Q
    |||| |||||||||||||  |||||||||||||| |||||| |||| ||||||    
T  18776733 cccttaaactcaaaatggagaaattcaccaatttcagtttggaataaaatgaa 18776681  T

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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 21631465 - 21631513
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21631465 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaa 21631513  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 44963101 - 44963050
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaa 213  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44963101 ccctcaaactcaaaatgggaaaattca-caatttgagtttgaaatacaatgaa 44963050  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 28124883 - 28124942
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaa 220  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||    
T  28124883 ccctcaaactcaaaatggggaaattcaccaatttgagcttggaatacaatgaaagtacaa 28124942  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 34844192 - 34844124
Alignment:
Q  24 agtaaactagatttgataaaagataaaa-gatgtgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||||||||||||||  |  ||  ||||||||||||||||||||||||||||||||||||    
T  34844192 agtaaactagatttgataaaagatggattgaaatgatacatgagtgttcctatatatagagtttagttg 34844124  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 4895520 - 4895461
Alignment:
Q  161 ccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaa 220  Q
    ||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||| |||||    
T  4895520 ccctcaaactcaaaatggggaaaatcaccaatttgagcttggaatacaatgaaagtacaa 4895461  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 9878382 - 9878452
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattacaacgatta 226  Q
    ||||| |||||||||||||||||| ||| ||| |||||||| ||||| |||||| |||| ||||| |||||    
T  9878382 agtcctcctcaaactcaaaatggggaaactcatcaatttgaatttgatatacaaagaaaatacaatgatta 9878452  T

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Target: scaffold0245 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 11084 - 11021
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaattaca 219  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  11084 agtccccttcaaactcaaagtgggaaaattcaccaatttgagtttgaaatactatgaaaataca 11021  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 35673522 - 35673571
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaat 205  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  35673522 agtccccctcaaactcaaaatggggaaatttaccaatttgagtttgaaat 35673571  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 1174999 - 1174945
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaa-tttgagtttgaaatacaa 209  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  1174999 agtcctcctcaaactcaaaatggaaaaattcaccaattttgagtttgaaatacaa 1174945  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 10885517 - 10885454
Alignment:
Q  159 ccccctcaaactcaaaatgggaaaattcaccaa-tttgagtttgaaatacaat-gaaattacaa 220  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| ||||||||||    
T  10885517 ccccctcaaactcaaagtggggaaattcaccaattttgagtttgaaataaaatggaaattacaa 10885454  T

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Target: scaffold0060 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 9203 - 9261
Alignment:
Q  156 agtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaaa 214  Q
    ||||| |||||||||||| || |  ||||||||||||||||||||||||||||||||||    
T  9203 agtcctcctcaaactcaagattgagaaattcaccaatttgagtttgaaatacaatgaaa 9261  T

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Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 15018 - 14975
Alignment:
Q  170 tcaaaatgggaaaattcaccaatttgagtttgaaatacaatgaa 213  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  15018 tcaaaatggggaaattcaccaatttgagtttggaatacaatgaa 14975  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 39252 - 39217
Alignment:
Q  56 tgatacatgagtgttcctatatatagagtttagttg 91  Q
    ||||||||||||||||||||||||||||||||||||    
T  39252 tgatacatgagtgttcctatatatagagtttagttg 39217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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