View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_low_10 (Length: 580)

Name: NF8973_low_10
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_low_10
NF8973_low_10
[»] chr2 (21 HSPs)
chr2 (136-563)||(5576077-5576504)
chr2 (17-327)||(5592970-5593277)
chr2 (17-384)||(5586670-5587044)
chr2 (350-557)||(5582213-5582421)
chr2 (136-347)||(5582463-5582673)
chr2 (394-563)||(5573046-5573215)
chr2 (202-327)||(5573233-5573358)
chr2 (17-129)||(5576562-5576675)
chr2 (394-563)||(5592783-5592952)
chr2 (17-116)||(5573414-5573513)
chr2 (233-317)||(5558827-5558911)
chr2 (18-110)||(12064683-12064775)
chr2 (473-548)||(5586572-5586647)
chr2 (205-329)||(12059434-12059558)
chr2 (223-332)||(12064822-12064931)
chr2 (223-337)||(12052033-12052147)
chr2 (60-127)||(12059314-12059381)
chr2 (54-110)||(12051887-12051943)
chr2 (233-319)||(5568486-5568572)
chr2 (70-130)||(5582732-5582793)
chr2 (491-539)||(5567420-5567468)
[»] chr3 (1 HSPs)
chr3 (280-317)||(7017100-7017137)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 136 - 563
Target Start/End: Complemental strand, 5576504 - 5576077
Alignment:
Q  136 aagtgtttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttgattgcagctcagttacttggttttgaga 235  Q
    ||||||||||| || ||||||||||||||||| || | || ||||||||||| ||||| | || ||||||| |||||||||||| | |||||||||||||    
T  5576504 aagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctcagcttcttggttttgaga 5576405  T
Q  236 aattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagacaagcataac 335  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5576404 aattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagacaagcataac 5576305  T
Q  336 tacggtataaattgatcaaagagccttttcatttatttgattgttcatcattatcttcaattagttattagtagatgacttgtgtatttttgttacattg 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5576304 tacggtataaattgatcaaagagccttttcatttatttgattgttcatcattatcttcaattagttattagtagatgacttgtgtatttttgtcacattg 5576205  T
Q  436 ctcatacatatgccaccaaaataacattatttctgtgcagggtttcgttatcagtttgggattacagttagaaaatcacaaagttatagtttctcgaatt 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5576204 ctcatacatatgccaccaaaataacattatttctgtgcagggttttgttatcagtttgggattacagttagaaaatcacaaagttatagtttctcgaatt 5576105  T
Q  536 gctagcagacttgaaggtattggcaaag 563  Q
    |||||||||||||||||||||| |||||    
T  5576104 gctagcagacttgaaggtattgacaaag 5576077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 5593277 - 5592970
Alignment:
Q  17 aattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5593277 aattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt 5593178  T
Q  117 atccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttgattgcagct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||   |||||||||    
T  5593177 atccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagcttaaactatgaacttctt---attgcagct 5593081  T
Q  217 cagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  5593080 cagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattc 5592981  T
Q  317 gtatcgagaca 327  Q
    |||| ||||||    
T  5592980 gtatggagaca 5592970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 5587044 - 5586670
Alignment:
Q  17 aattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt 116  Q
    ||||||||||| || || |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  5587044 aattacaatccctatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttttaactt 5586945  T
Q  117 atccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttgattgcagct 216  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| || || ||||||||| ||||    
T  5586944 aaccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttattttgattgtagct 5586845  T
Q  217 cagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattc 316  Q
    ||| | ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  5586844 cagcttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactacgcatctggcgcagctggaattc 5586745  T
Q  317 gtatcgagacaagcataactacggt----ataaatt---gatcaaagagccttttcatttatttgattgttcatc 384  Q
    ||| ||||||||||||  ||| |||    |||||||    |||||||||||||||||||| ||||||||||||||    
T  5586744 gtaccgagacaagcatggctaaggtttacataaattagaaatcaaagagccttttcatttctttgattgttcatc 5586670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 350 - 557
Target Start/End: Complemental strand, 5582421 - 5582213
Alignment:
Q  350 atcaaagagcctt-ttcatttatttgattgttcatcattatcttcaattagttattagtagatgacttgtgtatttttgttacattgctcatacatatgc 448  Q
    ||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||| |  ||||||||||||| |||| ||| | |||     
T  5582421 atcaaagagccttcttcatttctttgattgttcatctttatctgcaattagtttttagtagaggactagaatatttttgttacactgcttatatacatgt 5582322  T
Q  449 caccaaaataacattatttctgtgcagggtttcgttatcagtttgggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttg 548  Q
    ||||||||||||||||  ||||| |||||||  |||||||| ||||||||||||||| | ||||||||||| |||||||||| |||||||||||||||||    
T  5582321 caccaaaataacattacgtctgtacagggttctgttatcagcttgggattacagttaaagaatcacaaagtaatagtttctcaaattgctagcagacttg 5582222  T
Q  549 aaggtattg 557  Q
     ||||||||    
T  5582221 gaggtattg 5582213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 136 - 347
Target Start/End: Complemental strand, 5582673 - 5582463
Alignment:
Q  136 aagtgtttttctttgttcttttctcttgttaccttcaactcttgattcagcttaaactatgaacttcttttg-attgcagctcagttacttggttttgag 234  Q
    ||||||||||| ||||||||||||||| |||  || | || ||||||||||| ||||||| || || ||||  |||||||||||| | |||| |||||||    
T  5582673 aagtgtttttcattgttcttttctcttcttat-ttaagcttttgattcagctcaaactataaagttattttttattgcagctcagcttcttg-ttttgag 5582576  T
Q  235 aaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagacaagcataa 334  Q
    || ||||||| ||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| |    
T  5582575 aacttcattctaccatttgcaaacattagtggttcagacatactctaaggtgtgaactatgcatctcgtggagctggaattcgtgtcgagacaagcatga 5582476  T
Q  335 ctacggtataaat 347  Q
    ||| || ||||||    
T  5582475 ctatggcataaat 5582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 394 - 563
Target Start/End: Complemental strand, 5573215 - 5573046
Alignment:
Q  394 aattagttattagtagatgacttgtgtatttttgttacattgctcatacatatgccaccaaaataacattatttctgtgcagggtttcgttatcagtttg 493  Q
    |||||||| ||||||||||| | | |||||||||||||||| |||||||| ||||| | ||||||||||||| || || |||||||  | ||| || |||    
T  5573215 aattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgtccgtacagggttatgctattagcttg 5573116  T
Q  494 ggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttgaaggtattggcaaag 563  Q
    ||||||||||||  |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||    
T  5573115 ggattacagttaagaaatcacagagttatagtttctcaaattgctagcagacttggaggtattgacaaag 5573046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 5573358 - 5573233
Alignment:
Q  202 cttttgattgcagctcagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctg 301  Q
    |||||||||||||||||  | ||||| |||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||    
T  5573358 cttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctg 5573259  T
Q  302 gtgcagctggaattcgtatcgagaca 327  Q
    | | ||||||||||||||| ||||||    
T  5573258 gcggagctggaattcgtatggagaca 5573233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 5576675 - 5576562
Alignment:
Q  17 aattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacatt-cttttaact 115  Q
    |||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | || ||||    
T  5576675 aattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaact 5576576  T
Q  116 tatccatattatga 129  Q
    |||| |||||||||    
T  5576575 tatctatattatga 5576562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 394 - 563
Target Start/End: Complemental strand, 5592952 - 5592783
Alignment:
Q  394 aattagttattagtagatgacttgtgtatttttgttacattgctcatacatatgccaccaaaataacattatttctgtgcagggtttcgttatcagtttg 493  Q
    |||||||| ||||||||||| | | |||||||||||||||| |||||||| ||||| | ||||||||||||| || || |||||||  | ||| || |||    
T  5592952 aattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgtccgtacagggttatgctattagcttg 5592853  T
Q  494 ggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttgaaggtattggcaaag 563  Q
    ||||||||||||  |||||||| |||||||||||||| ||||||||||  ||||| ||| |||| |||||    
T  5592852 ggattacagttaagaaatcacagagttatagtttctcaaattgctagccaacttggaggaattgacaaag 5592783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 5573513 - 5573414
Alignment:
Q  17 aattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt 116  Q
    |||||||| ||||| || || ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  5573513 aattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacattctttcaactt 5573414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 5558911 - 5558827
Alignment:
Q  233 agaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcg 317  Q
    |||||||||| ||||| ||||| |||| || ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  5558911 agaaattcatcccaccctttgcaaacactattggttcagatatacttaaaggtgttaactatgcatctggtgcagctggaattcg 5558827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
Q  18 attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt 110  Q
    ||||||| ||||| || || |||| |||||| ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12064683 attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt 12064775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 473 - 548
Target Start/End: Complemental strand, 5586647 - 5586572
Alignment:
Q  473 cagggtttcgttatcagtttgggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttg 548  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  5586647 cagggttttgtcatcagtttgggattacagttaaaaaatcacaaagttataatttctcaaattgctagcagacttg 5586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 12059434 - 12059558
Alignment:
Q  205 ttgattgcagctcagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtg 304  Q
    ||||||||||||||  |  |||| ||| |||||||||||||| ||||||| |||| |||||||||||||||||||| || ||| ||||||||||| |  |    
T  12059434 ttgattgcagctcaccttgttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcagagatgtgaactatgcatcagagg 12059533  T
Q  305 cagctggaattcgtatcgagacaag 329  Q
     ||| |||||| |||||||||||||    
T  12059534 gagcaggaatttgtatcgagacaag 12059558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 12064822 - 12064931
Alignment:
Q  223 cttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcg 322  Q
    ||||| ||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||| || |||||||| |  | ||| |||||| ||||||    
T  12064822 cttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcaaagatgtgaaatatgcatccgagggagcgggaatttgtatcg 12064921  T
Q  323 agacaagcat 332  Q
    ||| ||||||    
T  12064922 agataagcat 12064931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 337
Target Start/End: Original strand, 12052033 - 12052147
Alignment:
Q  223 cttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcg 322  Q
    ||||| ||| ||| |||||||||| ||||||| |||| |||||||| ||| || ||||||||||| || ||||||| ||  | ||| |||||||||||||    
T  12052033 cttggattttagatattcattccatcatttgcaaacactaatggtttagatattctcaaaggtgtgaattatgcatatgagggagcaggaattcgtatcg 12052132  T
Q  323 agacaagcataacta 337  Q
    |||||||||| ||||    
T  12052133 agacaagcatgacta 12052147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
Q  60 gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat 127  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| | |||||||    
T  12059314 gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat 12059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 12051887 - 12051943
Alignment:
Q  54 caaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt 110  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  12051887 caaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt 12051943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 5568572 - 5568486
Alignment:
Q  233 agaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgta 319  Q
    |||| ||||| ||||||||||| |||| || ||| |||| |||||| ||||||||||||||||||||| || | ||||||| |||||    
T  5568572 agaatttcatcccaccatttgcaaacaatattggctcaggcatacttaaaggtgttaactatgcatctagttcggctggaagtcgta 5568486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
Q  70 caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa 130  Q
    ||||||||||||| |||||||||||||||||||| ||||||| || ||||| ||||||||||    
T  5582793 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa 5582732  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 539
Target Start/End: Complemental strand, 5567468 - 5567420
Alignment:
Q  491 ttgggattacagttagaaaatcacaaagttatagtttctcgaattgcta 539  Q
    |||||||||||| ||||||||||||||  ||||||| ||| ||||||||    
T  5567468 ttgggattacagatagaaaatcacaaaactatagttgctcaaattgcta 5567420  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 7017137 - 7017100
Alignment:
Q  280 aaaggtgttaactatgcatctggtgcagctggaattcg 317  Q
    |||||||||||||||||||||||  |||||||||||||    
T  7017137 aaaggtgttaactatgcatctggctcagctggaattcg 7017100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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