View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_low_13 (Length: 532)

Name: NF8973_low_13
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_low_13
NF8973_low_13
[»] chr5 (12 HSPs)
chr5 (1-275)||(14691047-14691321)
chr5 (1-196)||(14682626-14682824)
chr5 (139-275)||(28422839-28422975)
chr5 (272-357)||(14680589-14680673)
chr5 (375-453)||(14691230-14691308)
chr5 (375-453)||(28422884-28422962)
chr5 (462-512)||(28422987-28423037)
chr5 (272-357)||(14683191-14683282)
chr5 (114-190)||(41708481-41708557)
chr5 (462-512)||(14691334-14691384)
chr5 (145-190)||(41688194-41688239)
chr5 (287-351)||(41688296-41688360)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 14691047 - 14691321
Alignment:
Q  1 aaatgcatctgaggtgaaaaatggtgaattggagaaatcattgaagatttgtgaggctctggctgatgctgggattactgcttttcaagaaaaagagatt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14691047 aaatgcatctgaggtgaaaaatagtgaattggagaaatcattgaagatttgtgaggctctggctgatgctgggattactgcttttcaagaaaaagagatt 14691146  T
Q  101 gtggatgctgctcctttgcaaataattgagcctcccatgaaaaggagcaaggatgatcaaggtgcatcatcaggtatgaaaattctgcatacatgtctca 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14691147 gtggatgctactcctttgcaaataattgagcctcccatgaaaaggagcaaggatgatcaaggtgcataatcaggtatgaaaattctgcatacatgtctca 14691246  T
Q  201 ttgtttcgatgttgctttataaatagactgaataccgaattagttcgtaacaaattggacgcgactcgatgtagt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14691247 ttgtttcgatgttgctttataaatagactgaataccgaattagttcgtaacaaattggacgcgactcgatgtagt 14691321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14682626 - 14682824
Alignment:
Q  1 aaatgcatctgaggtgaaaaatggtgaattggagaaatcattgaagat---ttgtgaggctctggctgatgctgggattactgcttttcaagaaaaagag 97  Q
    |||||||| || |||||||||| |||| |||||||||||| ||||||    ||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  14682626 aaatgcatttggggtgaaaaatagtgagttggagaaatcaatgaagaagaattgtgaggctcaggttgatgctgggattacagcttttcaagaaaaagag 14682725  T
Q  98 attgtggatgctgctcctttgcaaataattgagcctcccatgaaaaggagcaaggatgatcaaggtgcatcatcaggtatgaaaattctgcatacatgt 196  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  14682726 attgtggatgctgctcctttgcaaagaattgatcctcccatgaaaaggaggaagggtgatcaaggtgcatcattaggtatgaaaattatgcatacatgt 14682824  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 28422839 - 28422975
Alignment:
Q  139 gaaaaggagcaaggatgatcaaggtgcatcatcaggtatgaaaattctgcatacatgtctcattgtttcgatgttgctttataaatagactgaataccga 238  Q
    ||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||  ||    
T  28422839 gaaaaggagtaaggatgctcaaggtccatcataaggtatgaaaattctgcatacatgtcttattgttccgatgttgctttataaataaactaaatattga 28422938  T
Q  239 attagttcgtaacaaattggacgcgactcgatgtagt 275  Q
    |||||  | |||||||||| ||||||||| |||||||    
T  28422939 attagcccctaacaaattgaacgcgactcaatgtagt 28422975  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 14680673 - 14680589
Alignment:
Q  272 tagtcttacaaatattgaattcagtacaaatgataggattaatgctttggtagatttcttggtagcttagcctgagaatgtgattt 357  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  14680673 tagtcatacaaatattgaattcaatacaaatgataggattaatgctttggtagatttcttggcagcttagcctgag-atgtgattt 14680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 14691230 - 14691308
Alignment:
Q  375 tctgcatacatgtcttattgttccgatgttgctttataaatagactaaataccgaattagtcccgaacaaattggacgc 453  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||    
T  14691230 tctgcatacatgtctcattgtttcgatgttgctttataaatagactgaataccgaattagttcgtaacaaattggacgc 14691308  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 28422884 - 28422962
Alignment:
Q  375 tctgcatacatgtcttattgttccgatgttgctttataaatagactaaataccgaattagtcccgaacaaattggacgc 453  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||| ||||||||| ||||    
T  28422884 tctgcatacatgtcttattgttccgatgttgctttataaataaactaaatattgaattagcccctaacaaattgaacgc 28422962  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 28422987 - 28423037
Alignment:
Q  462 gtaatactgaaattacttcctgacaaaattaatatccaaactagtctctca 512  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  28422987 gtaatactcaaattacttcctgacaaaattaatatccaaattagtctctca 28423037  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 14683191 - 14683282
Alignment:
Q  272 tagtcttacaaatattgaattcagtacaaatgataggatta------atgctttggtagatttcttggtagcttagcctgagaatgtgattt 357  Q
    ||||| || |||||||||||||| |||| ||||||||||||      ||| |||||||||||||| ||||| ||||||||||||||||||||    
T  14683191 tagtcgtataaatattgaattcaatacagatgataggattagggttaatgatttggtagatttctaggtagtttagcctgagaatgtgattt 14683282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 41708557 - 41708481
Alignment:
Q  114 ctttgcaaataattgagcctcccatgaaaaggagcaaggatgatcaaggtgcatcatcaggtatgaaaattctgcat 190  Q
    ||||||||| || ||| || ||||  |||||||||||| ||| ||||||||||||||||||||||| |||| |||||    
T  41708557 ctttgcaaacaaatgaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatcaggtatgacaattatgcat 41708481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 14691334 - 14691384
Alignment:
Q  462 gtaatactgaaattacttcctgacaaaattaatatccaaactagtctctca 512  Q
    |||||||| ||||||||| | ||||||||||||||||||| ||||||||||    
T  14691334 gtaatactcaaattactttcggacaaaattaatatccaaattagtctctca 14691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 41688194 - 41688239
Alignment:
Q  145 gagcaaggatgatcaaggtgcatcatcaggtatgaaaattctgcat 190  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  41688194 gagcaaggatgctcaaggtgcatcatctggtatgaaatttctgcat 41688239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 41688296 - 41688360
Alignment:
Q  287 tgaattcagtacaaatgataggattaatgctttggtagatttcttggtagcttagcctgagaatg 351  Q
    |||||||| ||||| |||| |||||||||||||||||||| |||  ||||||| ||||| |||||    
T  41688296 tgaattcaatacaagtgattggattaatgctttggtagatctctaagtagcttggcctgggaatg 41688360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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