View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_18 (Length: 470)
Name: NF8973_low_18
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_18 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 470
Target Start/End: Complemental strand, 26074461 - 26073999
Alignment:
| Q |
17 |
agcacagagtccagtggatcttgcaatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcctacaaatgccacacttgtt |
116 |
Q |
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|||| |||||||||||||||||| ||| ||| || |||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26074461 |
agcatagagtccagtggatcttgtaataacagatgttgtcatgaaccaggatatgaaatccttagacagaaactaccttcctacaaatgccacacttgtt |
26074362 |
T |
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| Q |
117 |
aatcaccaatacagtattggggtatgtaatttcatcaactaacaaatcagttaaaaaatgaaaattaacttgaattgaaaagacttttccctccaaagaa |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |
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| T |
26074361 |
aatcaccaatacagtattggggtatgtattttcatcaactaacaaatcagttaaaaaataaaaattaacttgaattaaaaagacttttccttccaaagaa |
26074262 |
T |
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| Q |
217 |
aaattatggctacctgattaaccatgtaacaccgacacttcatataaaaacgtgtttgatgtctgatacgataattgttgtctgatgtctattactatta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
26074261 |
aaattatggctacctgattaaccatgtaacaccgacacttcatatgaaaacgtgtttgatgtttgatacgataattgttgtctgatgtatattactatta |
26074162 |
T |
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| Q |
317 |
---------tcgttgttgttattattattagcaaggtctaagtgtaaaggttttgtcaaaggaaaattctgatattaactaactaatatggttgagtttg |
407 |
Q |
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| T |
26074161 |
ttattattgttgttgttattattattattagcaaggtctaagtgtaaaggttttgtcaaaggaaaattctgatattaactaactaatatggttgagtttg |
26074062 |
T |
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| Q |
408 |
gtatttataggtgcattttgaaggaaaagtgggagatattactataaatggaatgaattattc |
470 |
Q |
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| T |
26074061 |
gtatttataggtgcattttgaaggaaaagtgggagatattaatataaatggaatgaattattc |
26073999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 26094102 - 26093831
Alignment:
| Q |
17 |
agcacagagtccagtggatcttgcaatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcctacaaatgccacacttgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26094102 |
agcacagagtccagtggatcttgcaatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcctacaaatgccacacttgtt |
26094003 |
T |
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| Q |
117 |
aatcaccaatacagtattggggtatgtaatttcatcaactaacaaatcagttaaaaaatgaaaattaacttgaattgaaaagacttttccctccaaagaa |
216 |
Q |
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| T |
26094002 |
aaccaccaatacagtattggggtatgtattttcatcaactaacaaatcagtta-aaaataaaaattaacttgaattgaaaagacttttccttctaaagaa |
26093904 |
T |
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| Q |
217 |
aaattatggctacctgattaaccatgtaacaccgacacttcatataaaaacgtgtttgatgtctgatacgata |
289 |
Q |
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| T |
26093903 |
aaattgtgcttatctgattaactatgtaacaccgacactttatataaaaacatgtttgatgtctaatgcgata |
26093831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 356 - 470
Target Start/End: Complemental strand, 26093786 - 26093672
Alignment:
| Q |
356 |
ggttttgtcaaaggaaaattctgatattaactaactaatatggttgagtttggtatttataggtgcattttgaaggaaaagtgggagatattactataaa |
455 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
26093786 |
ggttttgtcaaaggaaaattctgatatcaactaactaatattgttgagtttggtatctataggtgcattttgaaggaaaagtgggcgatattaatataaa |
26093687 |
T |
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| Q |
456 |
tggaatgaattattc |
470 |
Q |
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| T |
26093686 |
tggaatgaattattc |
26093672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 26105534 - 26105377
Alignment:
| Q |
17 |
agcacagagtccagtggatcttgcaatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcctacaaatgccacacttgtt |
116 |
Q |
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|||||| |||||||||||||||| ||||||| ||||||| ||||| | | |||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
26105534 |
agcacaaagtccagtggatcttgtaatgacagatattgtcatgaaccaggaattgaaatccttagacagaaactaccttcccacaaatgctacacttgtt |
26105435 |
T |
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| Q |
117 |
aatcaccaatacagtattggggtatgtaatttcatcaacta-acaaatcagttaaaaa |
173 |
Q |
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| T |
26105434 |
aacaaccaattcaacattggggtatgtatgttcatcaactatacaaatctcttaaaaa |
26105377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 388 - 470
Target Start/End: Complemental strand, 26105163 - 26105080
Alignment:
| Q |
388 |
aactaatatggttgagtttggtatt-tataggtgcattttgaaggaaaagtgggagatattactataaatggaatgaattattc |
470 |
Q |
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| T |
26105163 |
aactgatatggttgagtttgttaaaatataggtacattttgaaggtaaagtgggagatattaacataaatggaatgaattattc |
26105080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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