View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_19 (Length: 452)
Name: NF8973_low_19
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 52854099 - 52854555
Alignment:
| Q |
17 |
ataaagtgacttaactattaaaatcaatagacgtagtactattacctaaaataactactatgtcggggacaaaaatcagaattaaagctcaagtaaaaga |
116 |
Q |
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| T |
52854099 |
ataaagtgacttaactattaaaatcaatagacgtagtactattacctaaaataactactatgtcggggacaaaaatcagaattaaagctcaagtaaaaga |
52854198 |
T |
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| Q |
117 |
cctcttttaattagactataatttacagctttacagagatttggagttttctcaatatttattgtgtgccccggaaa--------------------cat |
196 |
Q |
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| T |
52854199 |
cctcttttaattagactataatttacagctttacagagatttggagttttctcaatatttattgtgtgccccggaaacaagccaaacagatgtgaaacat |
52854298 |
T |
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| Q |
197 |
gccaatgatgtacatctgggtcctgaaaatcttcagcctgtcaaataaataaggtgttaaatttaacatggaacttttagtttacaatccaaaattttca |
296 |
Q |
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| T |
52854299 |
gccaatgatgtacatctgggtcctgaaaatcttcagcctgtcaaataaataaggtgttaaatttaacatggaacttttagtttacaatccaaaattttca |
52854398 |
T |
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| Q |
297 |
ttgaagatcagaagatattagatgacataagtttgacaaattgacacttgaaagatgaagagatggaaaacac-atataatatgattgcatacccattcc |
395 |
Q |
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| T |
52854399 |
ttgaagatcagaagatattagatgacataagtttgacaaattgacacttgaaagatgaagagatggaaaacacaatataatacgattgcatacccattcc |
52854498 |
T |
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| Q |
396 |
ataattgatccatccctagcaatttttataggaggaagcttagattgagactcaaat |
452 |
Q |
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| T |
52854499 |
ataattgatccatccctagcaatttttataggaggaagcttagattgagactcaaat |
52854555 |
T |
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Target: chr1 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 98 - 450
Target Start/End: Original strand, 48484650 - 48485031
Alignment:
| Q |
98 |
ttaaagctcaagtaaaagacctcttttaattagactataatttacagctttacagagatttggagttttctcaatatttattgtgtgccccggaaaca-- |
195 |
Q |
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| T |
48484650 |
ttaaagctcgcgtaaaatacctcttttaattagactataatccacagctttacagagatctggagttttctcaagatttattgtgtgccccggaaacaaa |
48484749 |
T |
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| Q |
196 |
------------------tgccaatgatgtacatctgggtcctgaaaatcttcagcctgtcaaataaataaggtgttaaatttaacatggaact-----t |
272 |
Q |
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| T |
48484750 |
ccaaacagatgtgaaacatgccgatgatgtacatctgggtcctggaaatcttcagcctgtcaaataaataaggtgttaaattcaacatggaattcctatt |
48484849 |
T |
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| Q |
273 |
ttagtttacaatccaaa-attttcattgaagatcag-aagatattagatgacataagtttgacaaattgacacttgaaagatgaagagatggaaaacaca |
370 |
Q |
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| T |
48484850 |
ctattctaccgtccaaacaatttcattgaaaatgaacaagatattatatgacataagttggacaaattgacacttgagagatgaagagaaggaaagcaaa |
48484949 |
T |
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| Q |
371 |
tat--aatatgattgcatacccattccataattgatccatccctagcaatttttataggaggaagcttagattgagactcaa |
450 |
Q |
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| T |
48484950 |
tattgaatatgattgcatacccattccataatggacccatccctagcaatttttgtaggaggaagcttggactgagactcaa |
48485031 |
T |
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