View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_low_20 (Length: 443)

Name: NF8973_low_20
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_low_20
NF8973_low_20
[»] chr3 (14 HSPs)
chr3 (95-426)||(53197217-53197551)
chr3 (95-162)||(8799317-8799384)
chr3 (95-162)||(38499819-38499886)
chr3 (95-162)||(53196988-53197055)
chr3 (95-161)||(4041417-4041483)
chr3 (95-162)||(38500055-38500122)
chr3 (95-153)||(43797361-43797419)
chr3 (95-155)||(43797586-43797646)
chr3 (95-133)||(46883646-46883684)
chr3 (125-162)||(46883424-46883461)
chr3 (95-133)||(8657428-8657466)
chr3 (95-133)||(8799550-8799588)
chr3 (95-156)||(25349944-25350005)
chr3 (125-162)||(43797652-43797689)
[»] chr2 (16 HSPs)
chr2 (95-163)||(22563444-22563512)
chr2 (95-162)||(4371454-4371521)
chr2 (95-162)||(22563210-22563277)
chr2 (95-162)||(29893031-29893098)
chr2 (95-163)||(21265562-21265630)
chr2 (95-162)||(12232563-12232630)
chr2 (95-162)||(17200078-17200145)
chr2 (95-162)||(21265796-21265863)
chr2 (95-162)||(34645780-34645847)
chr2 (95-165)||(34645544-34645614)
chr2 (97-167)||(20296257-20296327)
chr2 (95-162)||(20296650-20296717)
chr2 (110-147)||(33491417-33491454)
chr2 (195-252)||(35606194-35606251)
chr2 (95-139)||(17200312-17200356)
chr2 (125-165)||(33491448-33491488)
[»] chr7 (11 HSPs)
chr7 (95-162)||(35207409-35207476)
chr7 (95-162)||(19318453-19318520)
chr7 (95-162)||(25048258-25048325)
chr7 (95-162)||(35207178-35207245)
chr7 (95-162)||(19318382-19318449)
chr7 (93-156)||(29474644-29474707)
chr7 (95-154)||(39983871-39983930)
chr7 (95-163)||(2834433-2834501)
chr7 (95-162)||(35363318-35363385)
chr7 (95-157)||(6408488-6408551)
chr7 (95-133)||(28547514-28547552)
[»] chr5 (10 HSPs)
chr5 (95-162)||(17370067-17370134)
chr5 (95-163)||(31194199-31194267)
chr5 (95-162)||(31193965-31194032)
chr5 (95-163)||(8754657-8754725)
chr5 (95-162)||(36955303-36955370)
chr5 (95-162)||(14076903-14076970)
chr5 (95-162)||(36955528-36955595)
chr5 (95-163)||(32347131-32347199)
chr5 (95-132)||(42546583-42546620)
chr5 (95-162)||(9862226-9862293)
[»] chr1 (13 HSPs)
chr1 (98-164)||(24882969-24883035)
chr1 (95-160)||(34969987-34970052)
chr1 (95-155)||(49777057-49777117)
chr1 (95-162)||(24883202-24883269)
chr1 (95-162)||(3385545-3385612)
chr1 (95-163)||(49776818-49776886)
chr1 (95-162)||(34622559-34622626)
chr1 (95-161)||(27171800-27171866)
chr1 (95-162)||(3385308-3385375)
chr1 (95-154)||(33156688-33156747)
chr1 (97-162)||(33156456-33156520)
chr1 (95-160)||(33400857-33400922)
chr1 (95-153)||(37948797-37948855)
[»] chr6 (7 HSPs)
chr6 (95-163)||(16125521-16125589)
chr6 (95-162)||(22748588-22748655)
chr6 (95-162)||(16125756-16125823)
chr6 (95-162)||(22748822-22748889)
chr6 (195-252)||(655527-655584)
chr6 (95-155)||(11014555-11014615)
chr6 (125-162)||(33277315-33277352)
[»] chr4 (18 HSPs)
chr4 (95-163)||(7061971-7062039)
chr4 (95-163)||(50544255-50544323)
chr4 (95-162)||(54316063-54316130)
chr4 (97-162)||(9551461-9551526)
chr4 (97-162)||(24673957-24674022)
chr4 (92-157)||(46993072-46993137)
chr4 (95-163)||(11789858-11789926)
chr4 (95-163)||(17914982-17915050)
chr4 (95-162)||(3556366-3556433)
chr4 (98-147)||(42475891-42475940)
chr4 (95-159)||(23655302-23655366)
chr4 (103-162)||(21785940-21785999)
chr4 (95-160)||(5465855-5465920)
chr4 (95-156)||(50551486-50551547)
chr4 (95-155)||(8538361-8538421)
chr4 (103-162)||(35256142-35256201)
chr4 (95-145)||(1025140-1025190)
chr4 (102-158)||(32591165-32591221)
[»] chr8 (14 HSPs)
chr8 (95-162)||(6911029-6911096)
chr8 (95-162)||(14999171-14999238)
chr8 (95-162)||(15009092-15009159)
chr8 (94-164)||(16325079-16325149)
chr8 (95-162)||(16324844-16324911)
chr8 (95-162)||(43801470-43801537)
chr8 (95-162)||(43801705-43801772)
chr8 (95-162)||(41403994-41404061)
chr8 (95-134)||(6911263-6911302)
chr8 (95-162)||(8489373-8489440)
chr8 (95-145)||(22781072-22781122)
chr8 (95-133)||(22781286-22781324)
chr8 (125-162)||(40621644-40621681)
chr8 (95-162)||(41722061-41722128)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 95 - 426
Target Start/End: Original strand, 53197217 - 53197551
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcgaagttagggtgctgaaaaatatannnnnnnn 194  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||||| ||| |||||||||| |||||||||| |             
T  53197217 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccggacttgaagttagggggctgaaaaatgtttttttttt 53197316  T
Q  195 ---aataggggtccaaaattgctaccatggtaaacaaaggaggccaacaatgcatttaagctaaattattattaccgtaatccatattctatcatatgtt 291  Q
       ||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||  |||||||| || |||||||||||||||||||||||||    
T  53197317 tttaatagaggtccaaaattgctaccatggtaaacaaaggggaccaaaaatgcatttaagcctaattattactatcgtaatccatattctatcatatgtt 53197416  T
Q  292 tcatcacaaaagctcactaattaccaaatagttgattttatagcagttgtcaaactaataaagcaaactcgagagtggttctcacagaaattctcatttt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53197417 tcatcacaaaagctcactaattaccaaatagttgattttatagcagttatcaaactaataaagcaaactcgagagtggttctcacagaaattctcatttt 53197516  T
Q  392 ccactcccaaatcaaacatgaatctagccacattc 426  Q
    |||||||||||||||||||||||||||||||||||    
T  53197517 ccactcccaaatcaaacatgaatctagccacattc 53197551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 8799384 - 8799317
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||||||||    
T  8799384 acatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactc 8799317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 38499886 - 38499819
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  38499886 acatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 53197055 - 53196988
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  53197055 acatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggcatacccgaactc 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 4041417 - 4041483
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaact 161  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||||||||| |||||||||||||    
T  4041417 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 38500055 - 38500122
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||    
T  38500055 acatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 43797419 - 43797361
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcata 153  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||    
T  43797419 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcata 43797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 43797586 - 43797646
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacc 155  Q
    ||||||||| |||||||||||||||| |||||||||||  ||||||||||||| |||||||    
T  43797586 acatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 46883646 - 46883684
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggag 133  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  46883646 acatgtcttgcatccaaaccctaaatggagtaaatggag 46883684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 46883461 - 46883424
Alignment:
Q  125 taaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  46883461 taaatggagtttagcctaaatggagcatacccgaactc 46883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 8657466 - 8657428
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggag 133  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  8657466 acatgtcttgcattcaaaccctaaatggagtaaatggag 8657428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 8799550 - 8799588
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggag 133  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  8799550 acatgtcttgcatctaaaccctaaatggagtaaatggag 8799588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 25349944 - 25350005
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcataccc 156  Q
    ||||||||| |||||||||||||||| || ||||||||| |||   ||||||| ||||||||    
T  25349944 acatgtcttacatccaaaccctaaatagaataaatggagcttaatttaaatggagcataccc 25350005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 43797689 - 43797652
Alignment:
Q  125 taaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  43797689 taaatggagtttagcttaaatggagcatacccgaactc 43797652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 22563444 - 22563512
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  22563444 acatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactcg 22563512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 4371521 - 4371454
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  4371521 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 4371454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 22563277 - 22563210
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  22563277 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 22563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 29893031 - 29893098
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  29893031 acatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccgaactc 29893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 21265630 - 21265562
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||||||||||||||||||||||| |||||||| ||| |||| |||||||| |||||||| ||||||    
T  21265630 acatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcataccctaactcg 21265562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 12232630 - 12232563
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||| || |||||    
T  12232630 acatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagcatatccaaactc 12232563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 17200145 - 17200078
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||| ||||||| |||||||||||| || |||||||||| ||||||||||||||    
T  17200145 acatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 21265796 - 21265863
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||||| | |||||| |||||||    
T  21265796 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatactcgaactc 21265863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 34645780 - 34645847
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||||||||||| || ||||||||||| |||||||||||   ||||||||||||    
T  34645780 acatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaatatacccgaactc 34645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 34645614 - 34645544
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcgaa 165  Q
    |||||||||||||||| ||||||||| |||||||| ||  ||| ||||||| | |||||||||||||||||    
T  34645614 acatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccgaactcgaa 34645544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 20296327 - 20296257
Alignment:
Q  97 atgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcgaagt 167  Q
    ||||||| ||||||||||||||||  ||||||||||  |||||| |||||| ||||||  |||||||||||    
T  20296327 atgtctttcatccaaaccctaaatgaagtaaatggatcttagccaaaatggagcatacttgaactcgaagt 20296257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 20296650 - 20296717
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||  | ||||| |||||||||||| ||||||||||| | |||||||| |||||    
T  20296650 acatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaatagagcatacccaaactc 20296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 33491417 - 33491454
Alignment:
Q  110 aaaccctaaattgagtaaatggagtttagcctaaatgg 147  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaatgg 33491454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 35606251 - 35606194
Alignment:
Q  195 aataggggtccaaaattgctaccatggtaaacaaaggaggccaacaatgcatttaagc 252  Q
    |||||||| |||||||||||||||||  ||||| |||||  ||| |||||||||||||    
T  35606251 aatagggggccaaaattgctaccatgacaaacataggagatcaaaaatgcatttaagc 35606194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 17200312 - 17200356
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagc 139  Q
    ||||||||| |||||||||| ||||| |||||||||||| |||||    
T  17200312 acatgtcttacatccaaaccttaaatggagtaaatggagcttagc 17200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 33491448 - 33491488
Alignment:
Q  125 taaatggagtttagcctaaatggggcatacccgaactcgaa 165  Q
    ||||||||| ||| ||||||||| |||||||||||||||||    
T  33491448 taaatggagcttaacctaaatggagcatacccgaactcgaa 33491488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 35207409 - 35207476
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  35207409 acatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 19318453 - 19318520
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||| ||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  19318453 acatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 19318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 25048258 - 25048325
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||| |||||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  25048258 acatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactc 25048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 35207245 - 35207178
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||   ||||||||||||    
T  35207245 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaatatacccgaactc 35207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 19318382 - 19318449
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||| ||||| ||||| ||||||||| || ||||||||||||| ||||||||||||||    
T  19318382 acatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 19318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 29474644 - 29474707
Alignment:
Q  93 ctacatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcataccc 156  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||||||||| ||| ||||    
T  29474644 ctacatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatggagcacaccc 29474707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 39983871 - 39983930
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatac 154  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||||||| ||||||    
T  39983871 acatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatac 39983930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 2834433 - 2834501
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||| ||| ||||||||||||||| || ||||||||  ||||||||||||| |||||||| ||||||    
T  2834433 acatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcatacccaaactcg 2834501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 35363385 - 35363318
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||| ||||||| |||| |||||| ||||||||| |  ||||||||||||| ||||||||||||||    
T  35363385 acatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccgaactc 35363318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 6408488 - 6408551
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagt-aaatggagtttagcctaaatggggcatacccg 157  Q
    ||||||||||||||||||||||||||  ||| ||| | |||||| ||||||||| |||||||||    
T  6408488 acatgtcttgcatccaaaccctaaatgaagtaaaaagaagtttaacctaaatggagcatacccg 6408551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 28547552 - 28547514
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggag 133  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  28547552 acatgtcttgcatccaaaacctaaattgactaaatggag 28547514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 17370134 - 17370067
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  17370134 acatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaactc 17370067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 31194199 - 31194267
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  31194199 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactcg 31194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 31194032 - 31193965
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  31194032 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31193965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 8754725 - 8754657
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||    
T  8754725 acatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccgaactcg 8754657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 36955370 - 36955303
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||||||||| || |||||||||||    
T  36955370 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactc 36955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 14076903 - 14076970
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||| ||  ||||||||||||| ||||| ||||||||    
T  14076903 acatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcatatccgaactc 14076970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 36955528 - 36955595
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||| ||||||||||||| |||||||| ||| ||||||||||||| || ||||| |||||    
T  36955528 acatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagcgtacccaaactc 36955595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 32347131 - 32347199
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    ||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||| ||||| | |||||||    
T  32347131 acatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatggagcatatctgaactcg 32347199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 42546583 - 42546620
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatgga 132  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42546583 acatgtcttgcatccaaaccctaaatggagtaaatgga 42546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 9862226 - 9862293
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||| ||||||||||||||||||||| ||||||| | |  ||| ||||||||| |||||||| |||||    
T  9862226 acatatcttgcatccaaaccctaaatggagtaaacgaaacttaccctaaatggagcatacccaaactc 9862293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 24883035 - 24882969
Alignment:
Q  98 tgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcga 164  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||    
T  24883035 tgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactcga 24882969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 34970052 - 34969987
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaac 160  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||||    
T  34970052 acatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 49777057 - 49777117
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacc 155  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  49777057 acatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 24883202 - 24883269
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||| ||||||||||||||||||||| |||||||||||| |||||||||||||  |||||||||||||    
T  24883202 acatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 24883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 3385545 - 3385612
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||| |||| |||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||    
T  3385545 acatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 49776886 - 49776818
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||||||||||||||| ||||||| ||||||||  || ||||| ||||||| |||||||||||||||    
T  49776886 acatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaactcg 49776818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 34622559 - 34622626
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||||||| |||||| ||||| |||||| ||||| |||| |||||||| ||||||||||||||    
T  34622559 acatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaactc 34622626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 27171866 - 27171800
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaact 161  Q
    ||||||||| |||||||||| ||||| ||||||||| || ||||||||||||  |||||||||||||    
T  27171866 acatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 3385375 - 3385308
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||||||||||| | ||||| | || ||||||||||||  ||||||||||||||    
T  3385375 acatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactc 3385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 33156688 - 33156747
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatac 154  Q
    |||||||||| ||||||||||||||| ||||||||  || ||||||||||||| ||||||    
T  33156688 acatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagcatac 33156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 33156520 - 33156456
Alignment:
Q  97 atgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||| ||||||||| |||||| ||||||||||||  |||||| ||||| ||||||||||||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcct-aatggagcatacccgaactc 33156456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 33400922 - 33400857
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaac 160  Q
    ||||| ||| |||||||||| ||||| |||||||||||| ||||| ||||||| |||| |||||||    
T  33400922 acatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatggagcatgcccgaac 33400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 37948855 - 37948797
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcata 153  Q
    ||||||||| |||||||||| ||||||||||||||| || ||| | ||||||| |||||    
T  37948855 acatgtcttacatccaaaccttaaattgagtaaatgaagcttaacttaaatggagcata 37948797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 16125589 - 16125521
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    ||||||||||||||||||||||||||  | |||||| |||||||||||||||| |||||||||||||||    
T  16125589 acatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccgaactcg 16125521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 22748655 - 22748588
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||| | ||||| ||||||||||||  |||||||||| | ||||||||||||||    
T  22748655 acatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccgaactc 22748588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 16125756 - 16125823
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||| |||||||||||| | ||||||||||||||||||| |||| |||||| | ||||| ||||||||    
T  16125756 acatatcttgcatccaagctctaaattgagtaaatggagcttagtctaaatagagcatatccgaactc 16125823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 22748822 - 22748889
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||| ||||||| |||||||||||  |||| |||||||| ||||||| ||||||    
T  22748822 acatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 22748889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 655584 - 655527
Alignment:
Q  195 aataggggtccaaaattgctaccatggtaaacaaaggaggccaacaatgcatttaagc 252  Q
    |||||||| |||||||||||||||||| ||||| ||| |||||| | |||||||||||    
T  655584 aatagggggccaaaattgctaccatggcaaacatagggggccaaaagtgcatttaagc 655527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 11014555 - 11014615
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacc 155  Q
    |||| |||||||| |||||  ||||| || ||||||||||||||||||||||| |||||||    
T  11014555 acatatcttgcattcaaacattaaatagaataaatggagtttagcctaaatggagcatacc 11014615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 33277352 - 33277315
Alignment:
Q  125 taaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  33277352 taaatgaagtttagcctaaatggagcatacccgaactc 33277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 7062039 - 7061971
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||||||||||||||||| ||||| |||||||| ||| ||||||||||||| |||||||||||||||    
T  7062039 acatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccgaactcg 7061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 50544323 - 50544255
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||| |||||||||    
T  50544323 acatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcatatccgaactcg 50544255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 54316063 - 54316130
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||| ||||    
T  54316063 acatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccggactc 54316130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 9551461 - 9551526
Alignment:
Q  97 atgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||| ||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  9551461 atgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccgaactc 9551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 24673957 - 24674022
Alignment:
Q  97 atgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||| ||||||||| |||||| ||||||||| |||||||||||||||| ||||| ||||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcatatccgaactc 24674022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 46993137 - 46993072
Alignment:
Q  92 gctacatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccg 157  Q
    ||||||| ||||||||||||||||||||| || ||||||||| ||| ||||||||| |||||||||    
T  46993137 gctacatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcatacccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 11789926 - 11789858
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||| ||||||||| ||||||||||| ||||||||| || || |||||||||| |||||||||||||||    
T  11789926 acatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccgaactcg 11789858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 17914982 - 17915050
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcg 163  Q
    |||||||||||||||||||  ||||| |||||||||||  ||||||||||||| ||||| |||||||||    
T  17914982 acatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcatatccgaactcg 17915050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 3556433 - 3556366
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||| ||||||| |||| |||| ||||    
T  3556433 acatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatggagcatgcccggactc 3556366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 42475940 - 42475891
Alignment:
Q  98 tgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatgg 147  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  42475940 tgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatgg 42475891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 23655302 - 23655366
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaa 159  Q
    |||||||||||||| ||||||||||| || |||||| || ||| ||||||||| |||||||||||    
T  23655302 acatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccgaa 23655366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 21785940 - 21785999
Alignment:
Q  103 tgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||||  ||| ||||||||    
T  21785940 tgcatccaaactctaaatggagtaaatggagcttagcctaaatgggatatatccgaactc 21785999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 5465920 - 5465855
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaac 160  Q
    ||||||||| |||| |||||||||||  |||||||| |  ||||||||||||| ||||||||||||    
T  5465920 acatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccgaac 5465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 50551486 - 50551547
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcataccc 156  Q
    |||| |||| |||||||||| ||||| ||||||||  |||||||||||||||| ||||||||    
T  50551486 acatatcttacatccaaaccttaaatggagtaaataaagtttagcctaaatggagcataccc 50551547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 8538361 - 8538421
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacc 155  Q
    |||||||||||||||||||||||||| || ||||||||| | |  |||||||| |||||||    
T  8538361 acatgtcttgcatccaaaccctaaatggactaaatggagctaatactaaatggagcatacc 8538421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 35256201 - 35256142
Alignment:
Q  103 tgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||||| |||||| ||||||||| || |||| |||||| | ||||||||||||||    
T  35256201 tgcatccaaactctaaatggagtaaatgcagcttagtctaaatagagcatacccgaactc 35256142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 1025140 - 1025190
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaat 145  Q
    |||| |||||||||||||| |||||||||||||||| || |||||| ||||    
T  1025140 acatatcttgcatccaaactctaaattgagtaaatgaagcttagccaaaat 1025190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 32591221 - 32591165
Alignment:
Q  102 ttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccga 158  Q
    |||||| |||||| ||||| |||||||||||| ||| ||||||| | ||||||||||    
T  32591221 ttgcatacaaaccttaaatggagtaaatggagcttaacctaaatagagcatacccga 32591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 6911096 - 6911029
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||    
T  6911096 acatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 14999238 - 14999171
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||    
T  14999238 acatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 15009092 - 15009159
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||    
T  15009092 acatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 15009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 16325079 - 16325149
Alignment:
Q  94 tacatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactcga 164  Q
    ||||||||||||||||||||||||||| ||||||||||||||| || ||||||  |||||| |||||||||    
T  16325079 tacatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaagcatactcgaactcga 16325149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 16324911 - 16324844
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| || ||||| ||| ||||||||||||| |||| |||||||||    
T  16324911 acatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccgaactc 16324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 43801537 - 43801470
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| ||||||||| |||||| ||||||||| |||||||||||||||  ||||||||||||||    
T  43801537 acatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactc 43801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 43801705 - 43801772
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||| |||||||||||||| |||||| |||||||||||| |||||||||||||  |||||||||||||    
T  43801705 acatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 41403994 - 41404061
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    |||||||||||||||||||||||||| |||||||| ||  ||| ||||||||| |||||||| |||||    
T  41403994 acatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacccaaactc 41404061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 6911263 - 6911302
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagt 134  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6911263 acatgtcttgcatccaaaccctaaatggagtaaatggagt 6911302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 8489440 - 8489373
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||| |||||||||||||||| || |||||| || ||| ||||||||| |||||||| |||||    
T  8489440 acatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccaaactc 8489373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 22781122 - 22781072
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaat 145  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||||||||||||    
T  22781122 acatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaat 22781072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 22781286 - 22781324
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggag 133  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  22781286 acatatcttgcatccaaaccctaaattgagtaaatggag 22781324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 40621681 - 40621644
Alignment:
Q  125 taaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  40621681 taaatggagtttagcctaaatggagcatacccgaactc 40621644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 41722061 - 41722128
Alignment:
Q  95 acatgtcttgcatccaaaccctaaattgagtaaatggagtttagcctaaatggggcatacccgaactc 162  Q
    ||||||||||||||||| | ||||||  ||||||| ||| ||||||||||||   |||||||||||||    
T  41722061 acatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatgaaacatacccgaactc 41722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University