View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_low_22 (Length: 409)

Name: NF8973_low_22
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_low_22
NF8973_low_22
[»] chr3 (7 HSPs)
chr3 (13-409)||(30797877-30798271)
chr3 (356-406)||(29601066-29601116)
chr3 (356-404)||(45289151-45289199)
chr3 (369-407)||(40106677-40106715)
chr3 (369-405)||(17022731-17022767)
chr3 (373-409)||(39208799-39208835)
chr3 (369-409)||(52138987-52139027)
[»] chr8 (11 HSPs)
chr8 (356-405)||(29520823-29520872)
chr8 (356-409)||(30559867-30559920)
chr8 (371-409)||(42584548-42584586)
chr8 (356-405)||(490509-490558)
chr8 (356-405)||(31715994-31716043)
chr8 (356-405)||(43904724-43904773)
chr8 (357-409)||(16035782-16035834)
chr8 (113-145)||(18668253-18668285)
chr8 (369-409)||(36545336-36545376)
chr8 (369-405)||(44529412-44529448)
chr8 (369-405)||(45419422-45419458)
[»] chr7 (8 HSPs)
chr7 (356-405)||(37976409-37976458)
chr7 (369-404)||(35559053-35559088)
chr7 (356-409)||(21517435-21517488)
chr7 (356-405)||(28627992-28628041)
chr7 (360-409)||(36101832-36101881)
chr7 (369-405)||(6375055-6375091)
chr7 (369-405)||(13859067-13859103)
chr7 (369-405)||(21078104-21078140)
[»] chr5 (8 HSPs)
chr5 (356-405)||(418093-418142)
chr5 (359-407)||(43557890-43557938)
chr5 (356-407)||(35615457-35615508)
chr5 (356-409)||(1275438-1275491)
chr5 (357-405)||(14667946-14667994)
chr5 (357-409)||(20367068-20367120)
chr5 (369-405)||(24178697-24178733)
chr5 (369-409)||(34273200-34273240)
[»] chr4 (9 HSPs)
chr4 (356-405)||(34208328-34208377)
chr4 (369-409)||(8286626-8286666)
chr4 (356-405)||(28351733-28351782)
chr4 (369-409)||(12494850-12494890)
chr4 (369-405)||(19154922-19154958)
chr4 (369-405)||(28236369-28236405)
chr4 (369-409)||(33227396-33227436)
chr4 (369-409)||(53707981-53708021)
chr4 (369-409)||(56375477-56375517)
[»] chr2 (7 HSPs)
chr2 (225-318)||(12524666-12524759)
chr2 (113-203)||(10721711-10721801)
chr2 (356-405)||(9496040-9496089)
chr2 (356-405)||(19336952-19337001)
chr2 (356-405)||(30306206-30306255)
chr2 (369-405)||(451707-451743)
chr2 (369-405)||(28508865-28508901)
[»] chr6 (2 HSPs)
chr6 (356-397)||(9568873-9568914)
chr6 (356-405)||(9593767-9593816)
[»] chr1 (5 HSPs)
chr1 (356-405)||(4707279-4707328)
chr1 (356-405)||(41560403-41560452)
chr1 (369-409)||(22090283-22090323)
chr1 (369-405)||(29128970-29129006)
chr1 (369-405)||(34792408-34792444)
[»] scaffold0157 (1 HSPs)
scaffold0157 (369-409)||(25587-25627)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 409
Target Start/End: Complemental strand, 30798271 - 30797877
Alignment:
Q  13 cagagaagagagctagagtacaaaaccagaataattataaaagcacaaggaacnnnnnnngaaagcagaaattagtcaatgcccagacacaacataggca 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||| |||    
T  30798271 cagagaagagagctagagtacaaaaccagaataattacaaaagcacaaggaacaaataaagaaagcagaaattagtcaatgcccagacacaacataagca 30798172  T
Q  113 aagccaccaattatgatagtcaaaagcaatgttagaaaaagttgcctttaaccaccaaaaagaaaggtgcttgacattgtctaaaagcttagaaatcggg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  30798171 aagccaccaattatgatagtcaaaagcaatgttagaaaaagttgcctttaaccaccaaaaagaaatgtgcttgacattgtctaaaagcttagaaaccggg 30798072  T
Q  213 taaacattgttgttgaagatcatgttattcatttccttccaaatgattcaggtacaagcacaccaaattaaaatcataactgagcgcttggattttgaag 312  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |    
T  30798071 caaacattgttgttgaagatcctgttattcatttccttccaaatgattcaggtacaagcacaccaaattaaaatcataaccgagcacttggattttgacg 30797972  T
Q  313 taccagctaaagtatccaactgaatcaaatgatcacaggtaaattagagattattcagttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30797971 taccagctaaagtatccaactgaatcaaatgat--caggtaaattagagattattcagttggatccaaatttagtttatgatagaacattatgacgt 30797877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 29601066 - 29601116
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatga 406  Q
    |||||||||| | |||||||| ||||| |||||||||||||||||||||||    
T  29601066 ttagagattaatgagttggattcaaatatagtttatgatagaacattatga 29601116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 45289199 - 45289151
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattat 404  Q
    |||||||||| | |||||||||||||| | |||||||||||||||||||    
T  45289199 ttagagattaatgagttggatccaaatatggtttatgatagaacattat 45289151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 407
Target Start/End: Complemental strand, 40106715 - 40106677
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgac 407  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  40106715 agttggatccaaatatggtttatgatagaacattatgac 40106677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 17022767 - 17022731
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  17022767 agttggatccaattttagtttatgatagaatattatg 17022731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 39208799 - 39208835
Alignment:
Q  373 ggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||| | ||||||||||||||||||||||||    
T  39208799 ggatccaaatatggtttatgatagaacattatgacgt 39208835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 52138987 - 52139027
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  52138987 agttggatccaaatttggtgtatgatagaacactatgacgt 52139027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 29520823 - 29520872
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  29520823 ttagagattaatgagttggatccaaatatggtttatgatagaacattatg 29520872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 30559867 - 30559920
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||| | ||||||||||| || | ||||||||||||||||||||||||    
T  30559867 ttagagattaatgagttggatccatatatggtttatgatagaacattatgacgt 30559920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 409
Target Start/End: Original strand, 42584548 - 42584586
Alignment:
Q  371 ttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  42584548 ttggatccaaatatggtttatgatagaacattatgacgt 42584586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 490509 - 490558
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||  | |||||||||||||| | ||||||||||||||||||||    
T  490509 ttagagattgatgagttggatccaaatatggtttatgatagaacattatg 490558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 31715994 - 31716043
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||||||||| | ||||| ||||||||||||||    
T  31715994 ttagagattaattagttggatccaaatatggtttaagatagaacattatg 31716043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 43904773 - 43904724
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | ||||||||| |||| | ||||||||||||||||||||    
T  43904773 ttagagattaatgagttggatctaaatatggtttatgatagaacattatg 43904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 16035834 - 16035782
Alignment:
Q  357 tagagattattcagttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    ||||||||| | ||||||||| |||| | ||||||| ||||||||||||||||    
T  16035834 tagagattacttagttggatcgaaatatggtttatggtagaacattatgacgt 16035782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 18668253 - 18668285
Alignment:
Q  113 aagccaccaattatgatagtcaaaagcaatgtt 145  Q
    |||||||||||| ||||||||||||||||||||    
T  18668253 aagccaccaattgtgatagtcaaaagcaatgtt 18668285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 36545336 - 36545376
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  36545336 agttggatccaaatttggtgtatgatagaacactatgacgt 36545376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 44529412 - 44529448
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  44529412 agttggatccaaatttggtttatgatagaacactatg 44529448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 45419422 - 45419458
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  45419422 agtttgatccaaatttggtttatgatagaacattatg 45419458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 37976409 - 37976458
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  37976409 ttagagattaatgagttggatccaaatatggtttatgatagaacattatg 37976458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 35559088 - 35559053
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattat 404  Q
    |||||||||||||||||||||||| |||||||||||    
T  35559088 agttggatccaaatttagtttatggtagaacattat 35559053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 21517488 - 21517435
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||| | |||||||||||||| |  ||||||||| |||||||||||||    
T  21517488 ttagagattaataagttggatccaaatatgatttatgatataacattatgacgt 21517435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 28628041 - 28627992
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||| ||||| | ||||||||||||||||||||    
T  28628041 ttagagattaatgagttggatgcaaatgtggtttatgatagaacattatg 28627992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 36101881 - 36101832
Alignment:
Q  360 agattattcagttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||| | ||||||||| |||| | ||||||||||||||||||||||||    
T  36101881 agattaatgagttggatcaaaatatggtttatgatagaacattatgacgt 36101832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 6375055 - 6375091
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  6375055 agttggatccaaatttagtgtatgatagaacactatg 6375091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 13859103 - 13859067
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  13859103 agttggatccaaatttggtttatgatagaacactatg 13859067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 21078104 - 21078140
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||||| || |||||||||||||||||    
T  21078104 agttggatccaaatttggtgtatgatagaacattatg 21078140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 418142 - 418093
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  418142 ttagagattaatgagttggatccaaatgtggtttatgatagaacattatg 418093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 43557938 - 43557890
Alignment:
Q  359 gagattattcagttggatccaaatttagtttatgatagaacattatgac 407  Q
    ||||||||| ||||||||| |||| | ||||||||||||||||||||||    
T  43557938 gagattattgagttggatcgaaatatggtttatgatagaacattatgac 43557890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 35615457 - 35615508
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatgac 407  Q
    |||||||||| | ||||||||  |||| ||||||||||||||||||||||||    
T  35615457 ttagagattaatgagttggataaaaatatagtttatgatagaacattatgac 35615508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 1275438 - 1275491
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||| ||| ||||||| |||||||||| || | |||||||||||||||||||    
T  1275438 ttagaggttaatcagttgaatccaaatttggtgtttgatagaacattatgacgt 1275491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 14667946 - 14667994
Alignment:
Q  357 tagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    ||||||||| | |||||||||||| | | ||||||||||||||||||||    
T  14667946 tagagattaatgagttggatccaagtatggtttatgatagaacattatg 14667994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 20367068 - 20367120
Alignment:
Q  357 tagagattattcagttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    ||||||||| | |||||||||||||| | |||||||| | |||||||||||||    
T  20367068 tagagattaatgagttggatccaaatatggtttatgacataacattatgacgt 20367120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 24178697 - 24178733
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  24178697 agttggatccaaatttagtgtatgatagaacactatg 24178733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 34273200 - 34273240
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  34273200 agttggatccaaatttggtgtatgatagaacactatgacgt 34273240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 34208377 - 34208328
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  34208377 ttagagattaatgagttggatccaaatatggtttatgatagaacattatg 34208328  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 8286626 - 8286666
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  8286626 agttggatccaaatttggtttatgatagaacactatgacgt 8286666  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 28351733 - 28351782
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||| |||||||||||||| ||||||||  |||||| |||||    
T  28351733 ttagagattattgagttggatccaaatatagtttatagtagaaccttatg 28351782  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 12494850 - 12494890
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  12494850 agttggatccaaatttggtgtatgatagaacactatgacgt 12494890  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 19154958 - 19154922
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  19154958 agttggatccaaatttggtttatgatagaacactatg 19154922  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 28236369 - 28236405
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  28236369 agttggatccaaatttggtttatgatagaatattatg 28236405  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 33227396 - 33227436
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  33227396 agttggatccaaatttggtgtatgatagaacactatgacgt 33227436  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 53707981 - 53708021
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  53707981 agttggatccaaatttggtgtatgatagaacactatgacgt 53708021  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 56375477 - 56375517
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  56375477 agttggatccaaatttggtgtatgatagaacactatgacgt 56375517  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 12524666 - 12524759
Alignment:
Q  225 ttgaagatcatgttattcatttccttccaaatgattcaggtacaagcacaccaaattaaaatcataactgagcgcttggattttgaagtaccag 318  Q
    ||||| || |||||||||||||||||| |||| || || |  |||||||||||||| |||| ||||| ||||   || ||||||||||||||||    
T  12524666 ttgaaaattatgttattcatttccttcaaaataatccaagagcaagcacaccaaatcaaaaacataattgaggtttttgattttgaagtaccag 12524759  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 10721801 - 10721711
Alignment:
Q  113 aagccaccaattatgatagtcaaaagcaatgttagaaaaagttgcctttaaccaccaaaaagaaaggtgcttgacattgtctaaaagctta 203  Q
    |||||||||  ||||||||||| |||||| ||| |  ||  ||| |||||||||||| |||||||||  ||| ||||| ||||||||||||    
T  10721801 aagccaccacctatgatagtcagaagcaaggtttgtgaattttgtctttaaccaccagaaagaaaggaacttaacattatctaaaagctta 10721711  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 9496040 - 9496089
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||| ||| | |||||||||||||| | ||||||||||||||||||||    
T  9496040 ttagaggttaatgagttggatccaaatatggtttatgatagaacattatg 9496089  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 19337001 - 19336952
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | ||||||||| |||| | ||||||||||||||||||||    
T  19337001 ttagagattaatgagttggatcgaaatatggtttatgatagaacattatg 19336952  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 30306206 - 30306255
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||| | ||| |||||||||||||||| ||||||||||||||| ||||    
T  30306206 ttagaggtcattgagttggatccaaatttggtttatgatagaacactatg 30306255  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 451743 - 451707
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  451743 agttggatccaaatttagtgtatgatagaacactatg 451707  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 28508865 - 28508901
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  28508865 agttggatccaaatttggtttatgatagaacactatg 28508901  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 9568873 - 9568914
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgataga 397  Q
    |||||||||||| |||||||||||||| | ||||||||||||    
T  9568873 ttagagattattgagttggatccaaatatggtttatgataga 9568914  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 9593816 - 9593767
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||||| ||| | ||||||||||||||||||||    
T  9593816 ttagagattaatgagttggatcccaatatggtttatgatagaacattatg 9593767  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 4707328 - 4707279
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||| ||| | |||||||||||||||| ||||||||||||||| ||||    
T  4707328 ttagaggttaatgagttggatccaaatttggtttatgatagaacactatg 4707279  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 41560403 - 41560452
Alignment:
Q  356 ttagagattattcagttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||| | |||||||||||||| | | ||||||||||||||||||    
T  41560403 ttagagattaatgagttggatccaaatatgggttatgatagaacattatg 41560452  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 22090283 - 22090323
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  22090283 agttggatccaaatttggtgtatgatagaacactatgacgt 22090323  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 29128970 - 29129006
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||| | ||||||||||||||||||||    
T  29128970 agttggatccaaatatggtttatgatagaacattatg 29129006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 34792444 - 34792408
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatg 405  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  34792444 agttggatccaaatttggtttatgatagaacactatg 34792408  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 25627 - 25587
Alignment:
Q  369 agttggatccaaatttagtttatgatagaacattatgacgt 409  Q
    |||||||||||||||| || |||||||||||| ||||||||    
T  25627 agttggatccaaatttggtgtatgatagaacactatgacgt 25587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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