View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_24 (Length: 403)
Name: NF8973_low_24
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 9625233 - 9625608
Alignment:
| Q |
18 |
ctataaaccataaataatattttgcattttctgttcaatgattatatataccactattgaagtggcaatattttctttggcttgaggtacaagtaagacc |
117 |
Q |
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| T |
9625233 |
ctataaaccataaataatattttgcattttctgttcaatgattatatataccactattgaagtggcaatattttctttggcttgaggtacaagtaagacc |
9625332 |
T |
|
| Q |
118 |
cattcggtgagatatttgccctaatgagataggcttgtataattaagcaagaaggcttgtggtattatcaacttgagcatccttcacaagaactgcatct |
217 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9625333 |
cattcggtgagatatttgccctaatta--taggcttgtataattaagcaagaaggcttgtggtattatcaacttgagcatccttcacaagaactgcatct |
9625430 |
T |
|
| Q |
218 |
tttagagagctatgagttcgaccatagaatacataaataataactcctactgctagccatacagatactcgcgaccaagcagcaccccttcaaaaatata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9625431 |
tttagagagctatgagttcgaccatagaatacataaataataactcctactgctagccatacagatactcgcaaccaagcagcaccccttcaaaaatata |
9625530 |
T |
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| Q |
318 |
taacacaaatgatagaattagataataaagatgcacaattttatccctgcgaatataactcaattggtaggaacacca |
395 |
Q |
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| T |
9625531 |
ttacacaaatgttagaattagataataaagatgcacaattttatccctgtaaacataactcaattggtagcaacacca |
9625608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 9612264 - 9612610
Alignment:
| Q |
18 |
ctataaaccataaataatatttt-gcattttctgttcaatgattatatataccactattgaagtggcaatattttctttggcttgaggtacaagtaagac |
116 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
9612264 |
ctataaaccataaataatatttttgcatttcatgttcaatgattatatataccactattgaagtggcaatattttctttggcttgggatacaagtaagac |
9612363 |
T |
|
| Q |
117 |
ccattcggtgagatatttgccctaatgagataggcttgtataattaagcaagaaggcttgtggtattatcaacttgagcatccttcacaagaactgcatc |
216 |
Q |
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| T |
9612364 |
ccacttggtgtgatgtttgccctaatgagaaagacttgtataattaagcaagaaggcttgtggtattat---cttgagcagccttcacatgaactgcatc |
9612460 |
T |
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| Q |
217 |
ttttagagagctatgagttcgaccatagaatacataaataataactcctactgctagccatacagatactcgcgaccaagcagcaccccttcaaaaatat |
316 |
Q |
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| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
9612461 |
tcttagagagctatgggttcgaccatagaatacataaataataacacctattgctagccatacagatactcgcaaccaagtagcaccccttcaaaaatat |
9612560 |
T |
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| Q |
317 |
ataacac--aaatgatagaattagataataaagatgcacaattttatccc |
364 |
Q |
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| T |
9612561 |
ataacacataaatgttagaattagataataaagatgcacaattttatccc |
9612610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 9637574 - 9637864
Alignment:
| Q |
36 |
attttgcattttctgttcaatgattat---atataccactattgaagtggcaatattttctttggcttgaggtacaagtaagacccattcggtgagatat |
132 |
Q |
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|||||||||||||||| ||||||| || ||||||||||| |||||||||||||| |||||||||||| | ||||| |||| ||| |||| ||||| |
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| T |
9637574 |
attttgcattttctgtacaatgatgattacatataccactaatgaagtggcaatatattctttggcttgggatacaa--aagatccacatggtgtgatat |
9637671 |
T |
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| Q |
133 |
ttgccctaatgagataggcttgtataattaagcaagaaggcttgtgg------------tattatcaacttgagcatccttcacaagaactgcatctttt |
220 |
Q |
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|| ||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| || || ||||||| |
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| T |
9637672 |
ttcccctaataacataggcttgtataattaagcaagaaggcttgtgggggtgtaattagtatcatcaacttgagcagtcttcacataaattgtatctttt |
9637771 |
T |
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| Q |
221 |
agagagctatgagttcgaccatagaatacataaataataactcctactgctagccatacagatactcgcgaccaagcagcaccccttcaaaaa |
313 |
Q |
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||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
9637772 |
agagagctatgggttcgaccatagaatgcataaacaataactcctaatgctagccagacagatactcgcaaccaagtagcaccccttcaaaaa |
9637864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 9646505 - 9646638
Alignment:
| Q |
214 |
atcttttagagagctatgagttcgaccatagaatacataaataataactcctactgctagccatacagatactcgcgaccaagcagcaccccttcaaaaa |
313 |
Q |
| |
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||||||||||||||| || |||| ||||||||||||||||| || |||||||| | |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
9646505 |
atcttttagagagctgtgggttctaccatagaatacataaacaaaaactcctaatactagccatacagatactcgcacccaagttgcaccccttcaaaaa |
9646604 |
T |
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| Q |
314 |
tatataacacaaatgatagaattagataataaag |
347 |
Q |
| |
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|||| ||||||||| |||||||||| |||||||| |
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| T |
9646605 |
tataaaacacaaattatagaattagttaataaag |
9646638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 9652522 - 9652655
Alignment:
| Q |
214 |
atcttttagagagctatgagttcgaccatagaatacataaataataactcctactgctagccatacagatactcgcgaccaagcagcaccccttcaaaaa |
313 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||||| || |||||||| | |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
9652522 |
atcttttagagagctgtgggttctaccatagaatacataaacaaaaactcctaatactagccatacagatactcgcacccaagttgcaccccttcaaaaa |
9652621 |
T |
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| Q |
314 |
tatataacacaaatgatagaattagataataaag |
347 |
Q |
| |
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|||| ||||||||| |||||||||| |||||||| |
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| T |
9652622 |
tataaaacacaaattatagaattagttaataaag |
9652655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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