View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8973_low_27 (Length: 379)

Name: NF8973_low_27
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8973_low_27
NF8973_low_27
[»] chr4 (2 HSPs)
chr4 (1-367)||(36005911-36006268)
chr4 (1-167)||(36009406-36009568)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 36006268 - 36005911
Alignment:
Q  1 gaatgagtgcaaaaattagagcaaagctgattttagtaaacttggccattcttctcaattcttccaaacccttttgattaattatggttttaatgttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36006268 gaatgagtgcaaaaattagagcaaagctgattttagtaaacttggccattcttctcaattcttccaaacccttttaattaattatggttttaatgttgta 36006169  T
Q  101 agttgtgttttttagacttttggacttcggtttatatagaagctaggaacccaatatgactatagacactagttttttgagatactatatatatggcgtt 200  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      |||||||||    
T  36006168 agttgtgtttttcagacttttagacttcagtttatatagaagctaggaacccaatatgactatagaaactagttttttgagatac------tatggcgtt 36006075  T
Q  201 ggatttaagaagaatgccggctcaagggcagcatatattggacacatttttggcattagattggatactatattactatgatattatatgatgtttactg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  36006074 ggatttaagaagaatgccggctcaagggcagcatatattggacacatttttggcattagattggatactatat---tatgatattatatgatgtttactg 36005978  T
Q  301 gtagccgcatctcgcatcttatcttaatgctatatcaatgtgtcatgtcatatacgatgatgcttct 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36005977 gtagccgcatctcgcatcttatcttaatgctatatcaatgtgtcatgtcatatacgatgatgcttct 36005911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 36009568 - 36009406
Alignment:
Q  1 gaatgagtgcaaaaattagagcaaagctgattttagtaaacttggccattcttctcaattcttccaaacccttttgattaattatggttttaatgttgta 100  Q
    |||| |||| ||||||||||||||||  ||| |||||  |||| |||||||||||    | ||||||||| |||| | ||||||||||| |||||||||     
T  36009568 gaataagtgaaaaaattagagcaaagtagatgttagttgacttagccattcttct----tgttccaaacctttttaactaattatggttctaatgttgtg 36009473  T
Q  101 agttgtgttttttagacttttggacttcggtttatatagaagctaggaacccaatatgactatagac 167  Q
    |||||||||||||||||||| || |||| |||||||||| | ||| ||||| |||| ||||||||||    
T  36009472 agttgtgttttttagactttcgggcttcagtttatataggatctatgaacctaatacgactatagac 36009406  T

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