View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_31 (Length: 357)
Name: NF8973_low_31
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 7126384 - 7126711
Alignment:
| Q |
15 |
tggagccgagcctttttcagcgtatccaagattgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtaccacg |
114 |
Q |
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| T |
7126384 |
tggagccgagcctttttcagcgtatccaagattgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtaccacg |
7126483 |
T |
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| Q |
115 |
cttgtcaaattaaaaatacaagtatattatgaacccaagaaaaaccactgcaaaattgagttattgacgccaggtctttgtacttttgcttttgtcggta |
214 |
Q |
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| T |
7126484 |
cttgtcaaattaaaaattcaagtatattatgaacccaagaaaaactactgcaaaattgagttatcaacgccaggtctttgtactttttcttttgtcggta |
7126583 |
T |
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| Q |
215 |
cacctttcgagatactatcaggaaacaatcctagttctgttaaacacgtcaagatttatgcaaatatgtggtggaattatgtaacggctccttcgattct |
314 |
Q |
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| T |
7126584 |
cacctttcgagatactatcaggaaacaatcctagttctgttaaacacgtcaagatttatgcaaatatgtggtggaattatgtaactgctccttcgattct |
7126683 |
T |
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| Q |
315 |
ccttagctggttgcaagagcttgctgat |
342 |
Q |
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| T |
7126684 |
ccttagctggttgcaagagcttgctgat |
7126711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 7119253 - 7119339
Alignment:
| Q |
46 |
ttgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtaccacgcttgtcaaattaaaaata |
132 |
Q |
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| T |
7119253 |
ttgaatagtttgatgctttctgattttaaaattcttggggaacaaaatctatccatatcaagtaccacgctggacaaattagaaata |
7119339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 7103864 - 7103778
Alignment:
| Q |
46 |
ttgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtaccacgcttgtcaaattaaaaata |
132 |
Q |
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| T |
7103864 |
ttgaaaagtttgaggatttcttgttctaaaattttgggtgaacaaaatctatgcatatcaagtatcacgcttgtaaaattaacaata |
7103778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 7103741 - 7103676
Alignment:
| Q |
166 |
aaaattgagttattgacgccaggtctttgtacttttgcttttgtcggtacacctttcgagatacta |
231 |
Q |
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| T |
7103741 |
aaaattgagttatctacgccaagtctttgttcctttgtttttgtcggtactccttttcagatacta |
7103676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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