View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_32 (Length: 356)
Name: NF8973_low_32
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 44760751 - 44760425
Alignment:
| Q |
13 |
tggacatcatctaagccaaactctttacaagctgcttgaatctcgtcgatggttatgtaaccgctacaatctttgtcaaagtaggagaatgccgacaaca |
112 |
Q |
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| T |
44760751 |
tggacatcatctaagccaaactctttacaggctgcttgaatctcatcgatggttatgtaaccgctacaatctttgtcaaagtaggagaatgccgacaaca |
44760652 |
T |
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| Q |
113 |
gattttcctctctctccagcttatttaagtgcacagtagcagcaatgaattcgccatagtcaagtgtcccattattatctatatctgcctgttacatgca |
212 |
Q |
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| T |
44760651 |
gattttcctctctctccagcttatttaagtgcacagtagcagcaatgaattcgccatagtcaagtgtcccgttattatctatatctgcctgttacatgca |
44760552 |
T |
|
| Q |
213 |
agattaatataaggcttggccaattgtcagatttataattagggctagcatcacaagtaaagaaactggattaaaacctaaaacaataacgaactatata |
312 |
Q |
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| T |
44760551 |
agattaatataaggcttggccaattgtcagatttataattagggctagcatcacaagtaaagaaactggattaaaacctaaaacaataacgaattatata |
44760452 |
T |
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| Q |
313 |
tcttactgcatccataagatccttgat |
339 |
Q |
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| T |
44760451 |
tcttactgcatccataagatccttgat |
44760425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 44769875 - 44769552
Alignment:
| Q |
12 |
atggacatcatctaagccaaactctttacaagctgcttgaatctcgtcgatggttatgtaaccgctacaatctttgtcaaagtaggagaatgccgacaac |
111 |
Q |
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| T |
44769875 |
atggacatcgtccaaaccaaactccttacaagctgcctgtatctcgtcaatggttatgtaaccacttccatctttgtcaaagtacgagaatgctgacaat |
44769776 |
T |
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| Q |
112 |
agattttcctctctctccagcttatttaagtgcacagtagcagcaatgaattcgccatagtcaagtgtcccattattatctatatctgcctgttacatgc |
211 |
Q |
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| T |
44769775 |
agattttcctctctctccagcttatttaagtggacagtagcagcaatgaattcaccatagtcaagtgtcccgttattatcaatgtctgcctgtcacatgc |
44769676 |
T |
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| Q |
212 |
aagattaatataaggcttggccaattgtcagatttataattagggc-tagcatcacaagtaaagaaactggattaaaacctaaaacaataacgaactata |
310 |
Q |
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| T |
44769675 |
aacatt--tataagtcttgtccaattgtcaagtttataatttgcgcaaagcatcacagataacaaaactggtttaaaacctaaaacaataattaactatt |
44769578 |
T |
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| Q |
311 |
tatcttactgcatccataagatcctt |
336 |
Q |
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| T |
44769577 |
tatcttactgcatccataagatcctt |
44769552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 39943961 - 39943769
Alignment:
| Q |
12 |
atggacatcatctaagccaaactctttacaagctgcttgaatctcgtcgatggttatgtaaccgctacaatctttgtcaaagtaggagaatgccgacaac |
111 |
Q |
| |
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||||| ||||||||| ||||| || ||||||||| | |||||| || |||||||||||||| ||| |||||||||||| || | ||| || |||||| |
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| T |
39943961 |
atggatatcatctaaaccaaagtccttacaagcttgtgaaatctcatcaatggttatgtaaccactagcatctttgtcaaaataagcgaaggctgacaac |
39943862 |
T |
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| Q |
112 |
agattttcctctctctccagcttatttaagtgcacagtagcagcaatgaattcgccatagtcaagtgtcccattattatctatatctgcctgt |
204 |
Q |
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|| |||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||| ||||||| | ||||| | ||| |||||| |
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| T |
39943861 |
aggttttcctctctctccagcttatttaaatgaacagttgcagcaatgaattcaccatagtcaattgtcccacttttatcaacatccgcctgt |
39943769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 43462855 - 43463031
Alignment:
| Q |
27 |
gccaaactctttacaagctgcttgaatctcgtcgatggttatgtaaccgctacaatctttgtcaaagtaggagaatgccgacaacagattttcctctctc |
126 |
Q |
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|||||| ||||| |||||| ||||| |||||| ||||| ||||||||||||| ||||||||||| |||| || || | | || || |||||||| |
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| T |
43462855 |
gccaaagtctttgcaagcttgttgaagctcgtcaatggtgatgtaaccgctaccgtctttgtcaaaataggcaaaagctgcaaccaagttctcctctctt |
43462954 |
T |
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| Q |
127 |
tccagcttatttaagtgcacagtagcagcaatgaattcgccatagtcaagtgtcccattattatctatatctgcctg |
203 |
Q |
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|||| |||||| ||||||| ||||| || | ||||| |||||||| | ||| ||||| || |||||||| ||||| |
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| T |
43462955 |
tccatcttattcaagtgcagtgtagccgcgagaaattcaccatagtctattgttccattgttgtctatatcagcctg |
43463031 |
T |
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