View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_34 (Length: 352)
Name: NF8973_low_34
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 3 - 348
Target Start/End: Original strand, 35527730 - 35528075
Alignment:
| Q |
3 |
agcagcagcagcagcggaagaagaagaagattctccagctgatttctctttctccagttctacaataatctaattaaccaatacataaagattgttaatt |
102 |
Q |
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| T |
35527730 |
agcagcagcagcagcagcagaagaagaagattctccagctgatttctctttctccagttctgcaataatctaattaaccaatacataaagattgttaatt |
35527829 |
T |
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| Q |
103 |
caaagatatgtgtgcgactttctctaacacacttttcaacactctatttactaccgaagtaaaatttatgcaagttcaaccattttgaaaaacattaaag |
202 |
Q |
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| T |
35527830 |
caaagatatgtgtgaaactttctctaacacactctttaacactctatttactactgaagtaaaatttatgcaagttctaccattttgaaaaacattaaag |
35527929 |
T |
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| Q |
203 |
aaattaaagattgttaacatgtttttcttacttcaatagggccgttcgcaatgagggaattcacaccagtaatttcaaaagtgtttcccttatcatcggt |
302 |
Q |
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| T |
35527930 |
acattaaagattgttaacatgtttttcttacttcaatagggccgttcgcaatgagggagttcacaccagtaatttcaaaagtgtttcccttatcatcggt |
35528029 |
T |
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| Q |
303 |
caataaaacggaacatgttgccttattttgacattgatgtccatct |
348 |
Q |
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| T |
35528030 |
caataaaacggaacatgttgccttattttgacattgatgaccatct |
35528075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 34990554 - 34990471
Alignment:
| Q |
27 |
agaagattctccagctgatttctctttctccagttctacaataatctaattaaccaatacataaagattgttaattcaaagata |
110 |
Q |
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| T |
34990554 |
agaagattctccagctgatttctctttctccagttctgcagtaatctaattaaccaatagataaagattgttaattcaaagata |
34990471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 35545179 - 35545302
Alignment:
| Q |
196 |
attaaagaaattaaagattgttaacatgtttttcttacttcaatagggccgttcgcaatgagggaattcacaccagtaatttcaaaagtgtttcccttat |
295 |
Q |
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|||||||| |||| |||||| ||||||| || |||||||||||||| ||| | ||||||||||||||||||||| |||||||||| ||||| |||| |
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| T |
35545179 |
attaaagatattagagattgctaacatggcttatttacttcaatagggtcgtctgatatgagggaattcacaccagtactttcaaaagtctttccattat |
35545278 |
T |
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| Q |
296 |
catcggtcaataaaacggaacatg |
319 |
Q |
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| T |
35545279 |
catcggtcaataaaacggaacatg |
35545302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 35544964 - 35545046
Alignment:
| Q |
27 |
agaagattctccagctgatttctctttctccagttctacaataatctaattaaccaatacataaagattgttaattcaaagat |
109 |
Q |
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| T |
35544964 |
agaagattctccagctgatttctcttcctcaagttctgcggtaatctaattaaccaatagctaaagattgttaattcaaagat |
35545046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 35564371 - 35564437
Alignment:
| Q |
253 |
atgagggaattcacaccagtaatttcaaaagtgtttcccttatcatcggtcaataaaacggaacatg |
319 |
Q |
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| T |
35564371 |
atgagggaattcactccggaactttcaaaagtctttccattatcatcggtcaataaaacggaacatg |
35564437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 34990321 - 34990277
Alignment:
| Q |
207 |
taaagattgttaacatgtttttcttacttcaatagggccgttcgc |
251 |
Q |
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| T |
34990321 |
taaagattgttaacatggttttcttacttcaatacggcctttcgc |
34990277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 35545081 - 35545148
Alignment:
| Q |
125 |
tctaacacacttttcaacactctatttactaccgaagtaaaatttatgcaagttcaaccattttgaaa |
192 |
Q |
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| T |
35545081 |
tctaacactctttttaacacttcatttactgtcgaagtgaaatttatgtaagttctaccattttgaaa |
35545148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 34990436 - 34990366
Alignment:
| Q |
122 |
ttctctaacacacttttcaacactctatttactaccgaagtaaaatttatgcaagttcaaccattttgaaa |
192 |
Q |
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| T |
34990436 |
ttctctaacactctttctcacactttatttattaccgaagtgatatttatgtaagttctaccattttgaaa |
34990366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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