View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8973_low_37 (Length: 334)
Name: NF8973_low_37
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 19857523 - 19857830
Alignment:
| Q |
1 |
gcaaagtgcagtttggaaagtgagagtgaatggatgaaagtaaacaaggtcagggaaaagaagaagatgaaattctggagacatggttgtttctttcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19857523 |
gcaaagtgcagtttggaaagtgagagtgaatggatgaaagtaaacaaggtcagggaaaagaagaagatgaaattctggagacatggttgtttctttcttg |
19857622 |
T |
|
| Q |
101 |
aagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagaatgttggcggggttagttactagttatatagaaaggcggtgtgagttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19857623 |
aagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagagtgttggcggggttagttactggttatatagaaaggcggtgtgagttg |
19857722 |
T |
|
| Q |
201 |
tgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggaggaaaactttatgagtaattataaagttaatggaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19857723 |
tgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggaggaaaactttacgagtaattataaagttaatggaaat |
19857822 |
T |
|
| Q |
301 |
gtgacaga |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
19857823 |
gtgacaga |
19857830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University