View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_47 (Length: 293)
Name: NF8973_low_47
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 31837109 - 31837387
Alignment:
| Q |
1 |
taaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctccttatgaattacgaaaagctcgtgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31837109 |
taaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctccttatgaattatgaaaagctcgtgag |
31837208 |
T |
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| Q |
101 |
agagggagttcatcaaaatcaacacccgattcttgaacctgatatacattgggtgactttaattcgatgataaactttctctgttgctttgtgttttaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837209 |
agagggagttcatcaaaatcaacacccgattcttgaacctggtatacattgggtgactttaattcgatgataaactttctctgttgctttgtgttttaat |
31837308 |
T |
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| Q |
201 |
taagctagcatttggttgtagctcatgtttacattgttgtaaa---ttcttccacttcttgtacttgttaagttttaat |
276 |
Q |
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| T |
31837309 |
taagctagcatttggttgtagctcatgtttatattgttgtaaattcttcttccacttcttgtacttgttaagttttaat |
31837387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 31841150 - 31841420
Alignment:
| Q |
2 |
aaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctccttatgaattacgaaaagctcgtgaga |
101 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31841150 |
aaggaagagcaatttctgatagagtcttgtgt---caatggaagcacttcacgtcgcagaagacgaagttctccttatgaattatgaaaagctcgtgaga |
31841246 |
T |
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| Q |
102 |
gagggagttcatcaaaatcaacacccgattcttgaacctgatatacattgggtgactttaattcgatgataaactttctctgttgctttgtgttttaatt |
201 |
Q |
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| T |
31841247 |
gagggagttcatcaaaatcaacacccgattcttgaacctggt----attgggtgactttaattcgatgataaactttctctgttgctttgtgttttaatt |
31841342 |
T |
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| Q |
202 |
aagctagcatttggttgtagctcatgtttacattgttgtaaa---ttcttccacttcttgtacttgttaagttttaat |
276 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31841343 |
aagctagcatttggttgtagctcatgtttatattgttgtaaattcttcttccacttcttgtacttgttaagttttaat |
31841420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 38040762 - 38040897
Alignment:
| Q |
1 |
taaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgcagaagacgaagttctccttatgaattacgaaaagctcgtgag |
100 |
Q |
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|||||||||| ||| ||||||||| |||||| ||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
38040762 |
taaggaagaggaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgcagaagacgaagttctccttatgaactacgaggagctcgtgag |
38040861 |
T |
|
| Q |
101 |
agagggagttcatcaaaatcaacacccgattcttga |
136 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38040862 |
agagggagttcatcaaaatcaacacccgattcttga |
38040897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 38040895 - 38041002
Alignment:
| Q |
168 |
tgataaactttctctgttgctttgtgttttaattaagctagcatttggttgtagctcatgtttacattgttgtaaattcttccacttcttgtacttgtta |
267 |
Q |
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||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
38040895 |
tgataaactttctctgttggtctgtgttttaatta-gctagcatttggttgtagttcatgtttatattgttgtaaactcttatacttcttgtacttgtta |
38040993 |
T |
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| Q |
268 |
agttttaat |
276 |
Q |
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||||||||| |
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| T |
38040994 |
agttttaat |
38041002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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