View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_52 (Length: 281)
Name: NF8973_low_52
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_52 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 130 - 263
Target Start/End: Original strand, 5130054 - 5130187
Alignment:
| Q |
130 |
gccactgtcttgtttatagtaactagtgttgaggattgaatgttttataactttttcttggttgtttaatttgcagagacaggcagatataaatttgctt |
229 |
Q |
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| T |
5130054 |
gccactgtcttgtttatagtaactagtgttgaggattgaatgttttataactttttcttggttgtttaatttgcagagacaggcagatataaatttgctt |
5130153 |
T |
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| Q |
230 |
atgcttcttgtggcattgtcttgtcacttagtgc |
263 |
Q |
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| T |
5130154 |
atgcttcttgtggcattgtcttgtcacttagtgc |
5130187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 5129904 - 5130024
Alignment:
| Q |
15 |
gtttggtgttgccgtaatgaaatttgattctgatagaattgattttatgaaata-gattatggtcgaaagtgagtcaaatataaaatgatttatgtttag |
113 |
Q |
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| T |
5129904 |
gtttggttttgccgtaatgaaatttgattctgatagaattgattttatgaaaaaagattttggtcgaaaatgagtcaaatataaaatgatttatgtttag |
5130003 |
T |
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| Q |
114 |
atacatttataattatgccac |
134 |
Q |
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| T |
5130004 |
atacatttataattatgccac |
5130024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 28658161 - 28658118
Alignment:
| Q |
69 |
gattatggtcgaaagtgagtcaaatataaaatgatttatgttta |
112 |
Q |
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| T |
28658161 |
gattatggttgaaagtgagttaaacataaaatgatttatgttta |
28658118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 7223154 - 7223113
Alignment:
| Q |
79 |
gaaagtgagtcaaatataaaatgatttatgtttagatacatt |
120 |
Q |
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| T |
7223154 |
gaaagtgagtttaagataaaatgatttatgtttagatacatt |
7223113 |
T |
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Target: scaffold0172 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 15239 - 15323
Alignment:
| Q |
33 |
gaaatttgattctgatagaattgattttatgaaatagattatggtcgaaagtgagtcaaatataaaatgatttatgtttagatac |
117 |
Q |
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| T |
15239 |
gaaaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttggatac |
15323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 12111002 - 12110918
Alignment:
| Q |
33 |
gaaatttgattctgatagaattgattttatgaaatagattatggtcgaaagtgagtcaaatataaaatgatttatgtttagatac |
117 |
Q |
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| T |
12111002 |
gaaaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttggatac |
12110918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 36447705 - 36447748
Alignment:
| Q |
80 |
aaagtgagtcaaatataaaatgatttatgtttagatacatttat |
123 |
Q |
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| T |
36447705 |
aaagtgagttgaatataaaatgatttgtgtttagatacatttat |
36447748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 40352529 - 40352451
Alignment:
| Q |
38 |
ttgattctgatagaattgattttatgaaatagattatggtcgaaagtgagtcaaatataaaatgatttatgtttagata |
116 |
Q |
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| T |
40352529 |
ttgattttgatagaattgattttgtggaattgattttggttaaaagtgagtttaatgtaaagtgatttatgtttggata |
40352451 |
T |
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