View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_57 (Length: 260)
Name: NF8973_low_57
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 9828706 - 9828480
Alignment:
| Q |
17 |
ttatattggtggaattgtaaaactttaaataggaagtgacaatgaaaaggcaatagaaaacaaggaacgatgaggtagtgaagaaactggttagaggaat |
116 |
Q |
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| T |
9828706 |
ttatattggtggaattgtaaaactttaaataggaagtgacaatgaaaaggcaatagaaaacaaggaacgataaggtagtgaagaaactggttagaggaat |
9828607 |
T |
|
| Q |
117 |
cccttattttattttaggcttctagtagaaataggaggttcctttttagcgttacattacagctcttatgactgaaataactcatatctttttgtttcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9828606 |
cccttattttattttaggcttctagtagaaataggaggttcctttttagcgttacattacagctcttatgactgaaataactcatatctttttgtttcag |
9828507 |
T |
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| Q |
217 |
aattagggcttgcatgatcctgggctt |
243 |
Q |
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| T |
9828506 |
aattagggcttgcatgatcctgggctt |
9828480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 243
Target Start/End: Complemental strand, 35706455 - 35706237
Alignment:
| Q |
28 |
gaattgtaaaactttaaataggaagtgacaatgaa-aaggcaatagaaaacaaggaacgatgaggtagtgaagaaactggttagaggaatcccttatttt |
126 |
Q |
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| T |
35706455 |
gaatagtaaaacttcaaataggaagtgacaatgaataagacatttgaaaacaaggaatgatgaggtaatgaagaaaccggctaaaggaatcccttattgt |
35706356 |
T |
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| Q |
127 |
attttaggcttctagtagaaataggaggttcctttttagcgttacattacagctcttatgactgaaataactc--atatctttttgtttcagaatt-agg |
223 |
Q |
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| T |
35706355 |
-ttttggtcttctagtggatatagcaggtttctttttggtgttacactacagttcttatgacttgataaactcaaagatctctttgcttcagaattaagg |
35706257 |
T |
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| Q |
224 |
gcttgcatgatcctgggctt |
243 |
Q |
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||||||||||| ||| |||| |
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| T |
35706256 |
gcttgcatgattctgtgctt |
35706237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 38225850 - 38225654
Alignment:
| Q |
25 |
gtggaattgtaaaactttaaataggaagtgacaatgaaaaggcaatagaaaacaaggaacgatgaggtagtgaagaaactggttagaggaatcccttatt |
124 |
Q |
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||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||| ||| ||||||||| ||||||||| |||| |||||||| |||| |
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| T |
38225850 |
gtggaatagtaaaacttcaaataggaaatgacaatgaaaaggcaatagagaacaatgaatgatgaggtactgaagaaacccgttaaaggaatcctctatt |
38225751 |
T |
|
| Q |
125 |
ttattttaggcttctagtagaaataggaggttcctttttagcgttacattacagctcttatgactgaaataact--catatctttttgtttcagaatt |
220 |
Q |
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| T |
38225750 |
gt-ttttggtcttctagtggatatagcaaattcctttttagtgttacactattgttcttataactggaataacttaaagatctttttgcttcagaatt |
38225654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 38232158 - 38232016
Alignment:
| Q |
23 |
tggtggaattgtaaaactttaaataggaagtgacaatgaaaaggcaatagaaaacaaggaacgatgaggtagtgaagaaactggttagaggaatccctta |
122 |
Q |
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||||||||| ||||||||| |||||||||||||| |||||||| || |||||||||| ||| ||||||| | ||||||||| | || ||||||| |||| |
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| T |
38232158 |
tggtggaatagtaaaacttcaaataggaagtgacgatgaaaagacattagaaaacaatgaatgatgaggcactgaagaaacccgctaaaggaatctctta |
38232059 |
T |
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| Q |
123 |
ttttattttaggcttctagtagaaataggaggttcctttttagc |
166 |
Q |
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|| | |||| | |||||||| || |||| ||||||||||||||| |
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| T |
38232058 |
ttgt-ttttggtcttctagtggatatagtaggttcctttttagc |
38232016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 10457395 - 10457428
Alignment:
| Q |
46 |
taggaagtgacaatgaaaaggcaatagaaaacaa |
79 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10457395 |
taggaagtgacaatgaaaaggcaatagaaaacaa |
10457428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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