View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_6 (Length: 631)
Name: NF8973_low_6
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_6 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 363 - 613
Target Start/End: Complemental strand, 6012104 - 6011858
Alignment:
| Q |
363 |
cctctctgaaaatatgagataacaaaaagttcatagattttagtaaagtgagacaattaagccatttgtttttgatctgccatggaacaatctgaggaga |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6012104 |
cctctctgaaaatatgagataacaaaaagttcatagatttcagtaaagtgagacaattaagccatttgtttttgatctgccatggaacaatctgaggaga |
6012005 |
T |
|
| Q |
463 |
cttgactgccaaggtaaccagtttagagtcactttctatccataagttcagccaattcctttgatgtgcaaactccactgctagaatcactgccatatat |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
6012004 |
cttgactgccaaggtaaccagtttagagtcactttctatccataagttcagccaattcctttgatgtgcacactccactgctagaatcactgcc----at |
6011909 |
T |
|
| Q |
563 |
aaactcagcaaacaatgcattacatacaccaaggttttgagcaaaacaccc |
613 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6011908 |
aaacttagcaaacaatgcattacatacaccaaggttttgagcaaaacaccc |
6011858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 6012406 - 6012103
Alignment:
| Q |
12 |
gagattatggacgtcaatattgtcacatttataactattgcactgttcgttctagttactgctcccttttttctaataatttacgtaaaaacggtaagtc |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
6012406 |
gagattatggaagtcaatattgtcacatttataactattgcactattcgttctagttattgctccctttttcctaataatttacgtaaaaacggtaagtc |
6012307 |
T |
|
| Q |
112 |
aaagtgacnnnnnnnnataaattgatgtgcctataaggatcacatcatgatatcattaaaagaaaagtggagtnnnnnnnnggggaggggggaccaaacc |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
6012306 |
aaagtgacttttttttataaattgatgtgcctataaggatcacatcatgatatcattaaaagaaaagtggagtaaaaaaaaagggattggggaccaaacc |
6012207 |
T |
|
| Q |
212 |
aaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaatatgtaaaggtgcagaggaccaccattgaa |
311 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6012206 |
aaaccctcaaaatgttaggaaaatctatagaatcgaagacctagcctattcttaactaagtcttctctaatttgtaaaggtgcagaggaccaccattgaa |
6012107 |
T |
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| Q |
312 |
agcc |
315 |
Q |
| |
|
|||| |
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|
| T |
6012106 |
agcc |
6012103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 6016758 - 6016651
Alignment:
| Q |
12 |
gagattatggacgtcaatattgtcacatttataactattgcactgttcgttctagttactgctcccttttttctaataatttacgtaaaaacggtaagtc |
111 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||||| || |
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| T |
6016758 |
gagattatggaagtcaatattgtcacatttataactattgcactattcattctagttactgctccctttttaataataatttacgtcaaaacggtaaatc |
6016659 |
T |
|
| Q |
112 |
aaagtgac |
119 |
Q |
| |
|
||||||| |
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|
| T |
6016658 |
taagtgac |
6016651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 5747735 - 5747767
Alignment:
| Q |
87 |
ataatttacgtaaaaacggtaagtcaaagtgac |
119 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
5747735 |
ataatttacgtaaaaacggaaagtcaaagtgac |
5747767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 5784694 - 5784726
Alignment:
| Q |
87 |
ataatttacgtaaaaacggtaagtcaaagtgac |
119 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
5784694 |
ataatttacgtaaaaacggaaagtcaaagtgac |
5784726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 128 - 595
Target Start/End: Complemental strand, 7232390 - 7231933
Alignment:
| Q |
128 |
ataaattgatgtgcctataaggatcacatcatgat------atcattaaaagaaaagtggagtnnnnnnnn--ggggaggggggaccaaaccaaaccctc |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||| | ||||| ||||||| ||||| |
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|
| T |
7232390 |
ataaattggtgtgcctataaggatcacatcataatcataatatcattaaaagaaaagtggagtacaaaaaaaagggggagagggacaaaaccaacccctc |
7232291 |
T |
|
| Q |
220 |
aaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaatatgtaaaggtgcagaggaccaccattgaaagccatta |
319 |
Q |
| |
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|| |||| ||||||| ||||| |||||||||||||||||||||||||||| || |||||||| || | || || | ||||||| ||||||||| |||| |
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| T |
7232290 |
aatatgtaaggaaaa-ctataatatggaagacctagcctattcttaactaaatcatctctaatctgcatagctggaaaggaccatcattgaaaggcatt- |
7232193 |
T |
|
| Q |
320 |
tgagtactacctagtgcagctagcttatatgcacagtgattaccctctctgaaaatatgagataacaaaaagttcatagattttagtaaagtgagacaat |
419 |
Q |
| |
|
|||| ||| | |||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||| | |||||| ||||||| |
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|
| T |
7232192 |
--------------tgcaactaacatatatgtacagtgattgccctctctgaagatgtgagataacaaaaagttcatagatttcactaaagtaagacaat |
7232107 |
T |
|
| Q |
420 |
taa-gccatttgtttttgatctgccatggaacaatctgaggagacttgactgccaaggtaaccagtttagagtcactttctatccataagttcagccaat |
518 |
Q |
| |
|
||| ||||| |||||||||| ||||| ||||||| || ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
7232106 |
taaagccatctgtttttgatatgccaatgaacaatttgtggagacttgactgccaaggtaactagtttagagtcactttttatccataagttcagccaat |
7232007 |
T |
|
| Q |
519 |
tcctttgatgtgcaaactccactgctag-aatcactgccatatataaactcagcaaacaatgcattacatacaccaag |
595 |
Q |
| |
|
| |||||| |||| | ||||||||||| ||| |||||| ||||||||||||||||| |||||||| |||||||| |
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|
| T |
7232006 |
ttgtttgatatgcacattccactgctagaaattactgcc----ataaactcagcaaacaaggcattacaaacaccaag |
7231933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 18159068 - 18158964
Alignment:
| Q |
12 |
gagattatggacgtcaatattgtcacatttataactattgcactgttcgttctagttactgctcccttttttctaataatttacgtaaaaacggtaagtc |
111 |
Q |
| |
|
||||||||||| ||||||||| || |||||||| ||| |||||| ||| |||||||| || || ||||||| || ||||||||||||||||||||||||| |
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|
| T |
18159068 |
gagattatggaagtcaatattctcgcatttatagctactgcactcttcattctagttcctactgcctttttacttataatttacgtaaaaacggtaagtc |
18158969 |
T |
|
| Q |
112 |
aaagt |
116 |
Q |
| |
|
||||| |
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|
| T |
18158968 |
aaagt |
18158964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 48949323 - 48949262
Alignment:
| Q |
209 |
accaaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaa |
270 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || ||| |||||| ||||||||| |||| |
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|
| T |
48949323 |
accaaaccctcaaaatgttaagacaatctataacatagaaaacctagtctattcttagctaa |
48949262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 128 - 316
Target Start/End: Original strand, 28462609 - 28462794
Alignment:
| Q |
128 |
ataaattgatgtgcctataaggatcacatcatgatatcattaaaagaaaagtggagtnnnnnnnnggggaggggggaccaaaccaaaccctcaaaatgtt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||| |||| || |
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|
| T |
28462609 |
ataaattgatgtgcctataaggatcacatcatgatatcattaaaagaaaagtggagtacaaaaaaaagggagggggacaaaaccaaactctctaaatatt |
28462708 |
T |
|
| Q |
228 |
aggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaatatgtaaaggtgcagaggaccaccattgaaagcca |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28462709 |
aggaaaatctatagaatggaaaacctagcctatttttaactaagtcttctctaat---caaaggtgcagaggaccaccattgaaagcca |
28462794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 419051 - 418949
Alignment:
| Q |
14 |
gattatggacgtcaatattgtcacatttataactattgcactgttcgttctagttactgctcccttttttctaataatttacgtaaaaacggtaagtcaa |
113 |
Q |
| |
|
||||||||| ||||||||| || |||||||| ||| |||||| ||| |||||||| || | ||||||| || ||||||||||||||||||||||||||| |
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|
| T |
419051 |
gattatggaagtcaatattctcgcatttatagctactgcactcttcattctagttcctattgcctttttacttataatttacgtaaaaacggtaagtcaa |
418952 |
T |
|
| Q |
114 |
agt |
116 |
Q |
| |
|
||| |
|
|
| T |
418951 |
agt |
418949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 15727373 - 15727266
Alignment:
| Q |
12 |
gagattatggacgtcaatattgtcacatttataactattgcactgttcgttctagttactgctcccttttttctaataatttacgtaaaaacggtaagtc |
111 |
Q |
| |
|
||||||||||| | ||||||| || |||||||| ||| |||||| ||| |||||||| || || |||||| || |||| ||||||||||||||||||| |
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|
| T |
15727373 |
gagattatggaagccaatattctcgcatttatagctactgcactcttcattctagttcctactgactttttacttataacttacgtaaaaacggtaagtt |
15727274 |
T |
|
| Q |
112 |
aaagtgac |
119 |
Q |
| |
|
|||||||| |
|
|
| T |
15727273 |
aaagtgac |
15727266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 4718212 - 4718285
Alignment:
| Q |
209 |
accaaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaat |
282 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || |||||||||| |||| |||||| || ||||| ||||| |
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|
| T |
4718212 |
accaaaccctcaaaatgttaagacaatctataacatagaagacctagtctatacttaaccaaatcttcactaat |
4718285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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