View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8973_low_67 (Length: 239)
Name: NF8973_low_67
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 29287338 - 29287539
Alignment:
| Q |
25 |
catcaactcctccaaaatagatcaatgagaagaaaattcttgacaaaactaatctgtttcgttttctggaaaacgatcaactccttctctctttgaac-n |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29287338 |
catcaactcctccaaaatagatcaatgagaagaaaattcttgacaaaactaatctgtttcattttctggaaaacgatcaactccttcattctttgaactt |
29287437 |
T |
|
| Q |
124 |
nnnnnnnnattaatgatgtatcatggaacaaacgactgagaaccattctgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaaca |
223 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29287438 |
atttttttattaatgatgtatcatggaacaaacgagtgagaaccattatgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaaca |
29287537 |
T |
|
| Q |
224 |
cc |
225 |
Q |
| |
|
|| |
|
|
| T |
29287538 |
cc |
29287539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 35235787 - 35235884
Alignment:
| Q |
25 |
catcaactcctccaaaatagatcaatgagaagaaaattcttgacaaaactaatctgtttcgttttctggaaaacgatcaactccttctctctttgaac |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
35235787 |
catcaactcctccaaaatagatcaatgagaagaaaattcatgacaaaactaatctatttcgttttctggaaatcgatcaactccttttctctttgaac |
35235884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 35236168 - 35236244
Alignment:
| Q |
145 |
catggaacaaacgactgagaaccattctgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaa |
221 |
Q |
| |
|
||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35236168 |
catggaacaaatgggcgagaaccattctgtcccagcaagtacaaaactccgagtctcgtctctaacacacatctcaa |
35236244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University