View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_71 (Length: 224)
Name: NF8973_low_71
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_71 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14690808 - 14691031
Alignment:
| Q |
1 |
ctcaaaacagagattcaacatcttcaagagaagtttgaaatagagagactagctaggttacaagctgaggaagatttgaagaagagtgaggaactatgtg |
100 |
Q |
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| T |
14690808 |
ctcaaaacagagattcaaaatctttaagagaagtttgatatggagagacaagctaggttacaagctgaggaagatttgaagaagagtgaggaactgtgtg |
14690907 |
T |
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| Q |
101 |
agagaggtaaaatggcacagaataattatgaaaaatcgttgatggaaattaagaaaaatagtttaggtgaaagagaaagcattgttgagctaaaaatgaa |
200 |
Q |
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| T |
14690908 |
agagagctaaaatggcacagaataattatgaaaaatcgttgatggaaattaagaaaaatagtttaggtgaaagagaaagcatcgttgagctaaaaatgaa |
14691007 |
T |
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| Q |
201 |
taataatgaattggagttggaagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
14691008 |
taataatgaattggagttggaagt |
14691031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 41659596 - 41659379
Alignment:
| Q |
7 |
acagagattcaacatcttcaagagaagtttgaaatagagagactagctaggttacaagctgaggaagatttgaagaagagtgaggaactatgtgagagag |
106 |
Q |
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| T |
41659596 |
acagagattctacattttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagag |
41659497 |
T |
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| Q |
107 |
gtaaaatggcacagaataattatgaaaaatcgttgatggaaattaagaaaaatagtttaggtgaaagagaaagcattgttgagctaaaaatgaataataa |
206 |
Q |
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| T |
41659496 |
gaaaaagggcacagagtaattatgaaacattgttggaggaagttaagaaaactagtttagttgaaggagacatcattagagagctaagaaagaagaataa |
41659397 |
T |
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| Q |
207 |
tgaattggagttggaagt |
224 |
Q |
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| T |
41659396 |
tgaattggagttggaagt |
41659379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 41686585 - 41686371
Alignment:
| Q |
13 |
attcaacatcttcaagagaagtttgaaatagagagactagctaggttacaagctgaggaagatttgaagaagagtgaggaactatgtgagagaggtaaaa |
112 |
Q |
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|||| |||||||||||||||||||||| | ||||||||| | ||||| ||||||||||||||||||| || || |||||||| ||||| ||||| | || |
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| T |
41686585 |
attctacatcttcaagagaagtttgaattggagagactaacgaggtttcaagctgaggaagatttgagaaaaagagaggaactttgtgaaagagggataa |
41686486 |
T |
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| Q |
113 |
tggcacagaataattatgaaaaatcgttgatggaaattaag---aaaaatagtttaggtgaaagagaaagcattgttgagctaaaaatgaataataatga |
209 |
Q |
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| T |
41686485 |
gagcacaaaataattatgaaaaattgttgaaggaagttaaggaaaaaactagtttgggtgatagagacatcattggagagctaagaaagaagaacagtga |
41686386 |
T |
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| Q |
210 |
attggagttggaagt |
224 |
Q |
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||||||||| ||||| |
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| T |
41686385 |
attggagttagaagt |
41686371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 14682424 - 14682516
Alignment:
| Q |
65 |
ctgaggaagatttgaagaagagtgaggaactatgtgagagaggtaaaatggcacagaataattatgaaaaatcgttgatggaaattaagaaaa |
157 |
Q |
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| T |
14682424 |
ctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagttaagaaaa |
14682516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 41708956 - 41708752
Alignment:
| Q |
20 |
atcttcaagagaagtttgaaatagagagactagctaggttacaagctgaggaagatttgaagaagagtgaggaactatgtgagagaggtaaaatggcaca |
119 |
Q |
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| T |
41708956 |
atcttcaagagaaggttgaaatggagaaaaaaacgaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcaca |
41708857 |
T |
|
| Q |
120 |
gaataattatgaaaaatcgttgatggaaattaagaaaaatagtttaggtgaaagagaaagcattgttgagctaaaaatgaataataatgaattggagttg |
219 |
Q |
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|||||||||||||| | |||| |||| ||||||||| | |||| ||||| ||| | ||||| ||||||| || ||| || |||||||||||||| |
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| T |
41708856 |
aaataattatgaaaagttattgaaggaagttaagaaaacaaacttagctgaaaaagacaccattggagagctaagaaagaagaacaatgaattggagtta |
41708757 |
T |
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| Q |
220 |
gaagt |
224 |
Q |
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||||| |
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| T |
41708756 |
gaagt |
41708752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 41718028 - 41717824
Alignment:
| Q |
20 |
atcttcaagagaagtttgaaatagagagactagctaggttacaagctgaggaagatttgaagaagagtgaggaactatgtgagagaggtaaaatggcaca |
119 |
Q |
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|||||||||||||| ||||||| |||| | | | ||||| ||||| ||||||||||||| || || |||||||| ||||| | ||| |||| ||||| |
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| T |
41718028 |
atcttcaagagaaggttgaaatggagaaaaaaacaaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcaca |
41717929 |
T |
|
| Q |
120 |
gaataattatgaaaaatcgttgatggaaattaagaaaaatagtttaggtgaaagagaaagcattgttgagctaaaaatgaataataatgaattggagttg |
219 |
Q |
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| T |
41717928 |
aaataattatgaaaagttattgaaggaagttaagaaaacaaacttagctgaaaaagacaccattggagagctaagaaagaagaacaatgaattggagtta |
41717829 |
T |
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| Q |
220 |
gaagt |
224 |
Q |
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||||| |
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| T |
41717828 |
gaagt |
41717824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 41687747 - 41687846
Alignment:
| Q |
13 |
attcaacatcttcaagagaagtttgaaatagagagactagctaggttacaagctgaggaagatttgaagaagagtgaggaactatgtgagagaggtaaaa |
112 |
Q |
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|||| |||||||||||||||||||||||| || | |||| | ||||| |||| |||||||||| ||| ||| || |||||||||||||| ||||| |||| |
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| T |
41687747 |
attctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttgaggaagatgtgaggaaaagagaggaactatgtgaaagagggaaaa |
41687846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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