View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8973_low_72 (Length: 215)
Name: NF8973_low_72
Description: NF8973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8973_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 1960827 - 1960628
Alignment:
| Q |
17 |
tttatttcggtatttatgcattgtatcaatcatgactaagatgttagcaatagtatgttaaaatttagttaatttatatttatg--taacatgtttgatg |
114 |
Q |
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| T |
1960827 |
tttatttcggtatgtatgcattgtatcaatcatgactaagatgttagcaatagtatgttaaaatttagttaatttatatc-atgactaacatgtttgatg |
1960729 |
T |
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| Q |
115 |
caggttt-aatcttcgcgcttgtcaaactgaaagcgtgataaaattctcaaatgaattttggggttcgtcttttcatgcttattttgatgtccatctcat |
213 |
Q |
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| T |
1960728 |
catgttttaatcttcgcgcttgtgaaactgaaagcgtgataaaattcttaaatgaattttggggttcgtcttttcatgcttattttgctttccttctcat |
1960629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 39749717 - 39749609
Alignment:
| Q |
106 |
tgtttgatgcaggtttaatcttcgcgcttgtcaaactgaaagcgtgataaaattctcaaatgaattttggggttcgtcttttcatgcttattttgatgtc |
205 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||| | || |
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| T |
39749717 |
tgtttgatgcaggtttaatcttcgcgcttgttaaactgaaagtgtgataaaattctcaaatgaatctcggggttcgtctttttgtgcttattttgctctc |
39749618 |
T |
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| Q |
206 |
catctcatt |
214 |
Q |
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| T |
39749617 |
cttctcatt |
39749609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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