View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8974_low_1 (Length: 1230)

Name: NF8974_low_1
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8974_low_1
NF8974_low_1
[»] chr8 (9 HSPs)
chr8 (18-458)||(11825195-11825635)
chr8 (260-449)||(1495505-1495694)
chr8 (144-308)||(23093118-23093282)
chr8 (318-455)||(23090198-23090335)
chr8 (454-531)||(11825074-11825151)
chr8 (454-531)||(23090078-23090155)
chr8 (454-518)||(1495747-1495811)
chr8 (18-93)||(23093410-23093496)
chr8 (353-455)||(44762154-44762256)
[»] chr3 (3 HSPs)
chr3 (553-813)||(42635312-42635569)
chr3 (1010-1224)||(42635724-42635938)
chr3 (906-944)||(42635686-42635724)
[»] chr5 (3 HSPs)
chr5 (610-760)||(7228945-7229089)
chr5 (898-976)||(7228593-7228671)
chr5 (1096-1224)||(7228292-7228417)
[»] chr4 (6 HSPs)
chr4 (631-747)||(49598722-49598832)
chr4 (455-529)||(12638086-12638160)
chr4 (926-976)||(49599089-49599139)
chr4 (457-529)||(36050739-36050811)
chr4 (457-529)||(36053998-36054070)
chr4 (301-392)||(24733877-24733968)
[»] chr7 (3 HSPs)
chr7 (457-529)||(41712368-41712440)
chr7 (457-528)||(49017204-49017275)
chr7 (457-519)||(6102989-6103051)
[»] chr2 (2 HSPs)
chr2 (457-529)||(31211889-31211961)
chr2 (464-529)||(31193253-31193318)
[»] chr1 (1 HSPs)
chr1 (457-529)||(18583888-18583960)
[»] chr6 (1 HSPs)
chr6 (457-529)||(33242924-33242996)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 11825635 - 11825195
Alignment:
Q  18 tttatgtcatcttaagttagttcaaccacaaattttttcttcaattagtttacttttccgctatcggttatagtctaacctatcagtcattcgttatagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11825635 tttatgtcatcttaagttagttcaaccacaaattttttcttcaatcagtttacttttccgctatcggttatagtctaacctatcagtcattcgttatagc 11825536  T
Q  118 ctaatttatcaattatttgnnnnnnnactgccaaatagaaccgacgtgtgcctttgaagtgaactaaatgtaaatatatttataaatggtctttaacttt 217  Q
    |||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11825535 ctaatttatcaattatttgtttttttaccgccaaatagaaccgacgtgtgcctttgaagtgaactaaatgtaaatatatttataaatggtctttaacttt 11825436  T
Q  218 aatcctgaaggtttccctcacgcttgaaacgccataagagaacaatggtaaaagtgttccaattagactagtgacgacaagaccaccatagccaccatag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11825435 aatcctgaaggtttccctcacgcttgaaacgccataagagaacaatggtaaaagtgttccaattagactagtgacgacaagaccaccgtagccaccatag 11825336  T
Q  318 aagaccatgacctcacatagtcaacgcaaccactgtcatcttagccacctcagattttcctgttgacctaaaataactctcagtgcagaggatttgccaa 417  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  11825335 aagaccatgacctcacatagtcaacgcaaccaccgtcatcttagccacctcggattttcctattgccctaaaataactctcagtgcagaggatttgccaa 11825236  T
Q  418 taggcatcttcgtttccgtcgaaaagtgaaagctccataat 458  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  11825235 taggcatcttcgtttccgttgaaaagtgaaagctccataat 11825195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 2e-71
Query Start/End: Original strand, 260 - 449
Target Start/End: Original strand, 1495505 - 1495694
Alignment:
Q  260 caatggtaaaagtgttccaattagactagtgacgacaagaccaccatagccaccatagaagaccatgacctcacatagtcaacgcaaccactgtcatctt 359  Q
    |||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  1495505 caatggaaaaagtgttccaattagactggtgacgacaaaagcaccatagccaccatagaagagcatgacctcacatagtcaacgcaaccaccgtcatctt 1495604  T
Q  360 agccacctcagattttcctgttgacctaaaataactctcagtgcagaggatttgccaataggcatcttcgtttccgtcgaaaagtgaaag 449  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||||||||| ||| |||| |||||||||||||||    
T  1495605 agccacctctgattttcctgttgccctaaaataactctcagtgcagaggatccgccaataggcatattcttttcggtcgaaaagtgaaag 1495694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 144 - 308
Target Start/End: Complemental strand, 23093282 - 23093118
Alignment:
Q  144 actgccaaatagaaccgacgtgtgcctttgaagtgaactaaatgtaaatatatttataaatggtctttaactttaatcctgaaggtttccctcacgcttg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  ||||     
T  23093282 actgccaaatagaaccgacgtgtgcctttgaagtgaactaaatgtaaatatatttataaatagtctttaactttaagcctgaaggtttccctcgggcttt 23093183  T
Q  244 aaacgccataagagaacaatggtaaaagtgttccaattagactagtgacgacaagaccaccatag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  23093182 aaacgccataagagaacaatggtaaaagtgttccaattagactggtgacgataagaccaccatag 23093118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 318 - 455
Target Start/End: Complemental strand, 23090335 - 23090198
Alignment:
Q  318 aagaccatgacctcacatagtcaacgcaaccactgtcatcttagccacctcagattttcctgttgacctaaaataactctcagtgcagaggat-ttgcca 416  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||   ||||    
T  23090335 aagagcatgacctcacatagtcaacgcaaccgccgtcatcttagccacctctgattttcctgttgccctaaaataactctcagtgcagaggatcccgcca 23090236  T
Q  417 ataggcatcttcgtttccgtcgaaaagtgaaagctccat 455  Q
    |||||||| ||||||| || |||||||||||||||||||    
T  23090235 ataggcatattcgttt-cggcgaaaagtgaaagctccat 23090198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 454 - 531
Target Start/End: Complemental strand, 11825151 - 11825074
Alignment:
Q  454 ataatacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaattga 531  Q
    |||||||||| ||||||||||||||||| || ||||||||||||||||| ||| || | |||||||||||||||||||    
T  11825151 ataatacgactcaattcgaatagggatcacactccataaattaagagagaaaattaaagataaaagaaaggaaattga 11825074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 454 - 531
Target Start/End: Complemental strand, 23090155 - 23090078
Alignment:
Q  454 ataatacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaattga 531  Q
    ||||||| |||||||| ||||||| |||||| ||||||||||| ||||| |||  ||| ||||||||||| |||||||    
T  23090155 ataatacaacccaatttgaataggaatcgcactccataaattatgagagaaaatcagagataaaagaaagaaaattga 23090078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 1495747 - 1495811
Alignment:
Q  454 ataatacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaa 518  Q
    |||||||||||||||||||||||| |||||| | ||||||||| || || |||||||| ||||||    
T  1495747 ataatacgacccaattcgaataggaatcgcacttcataaattatgaaagaaaactagagataaaa 1495811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 23093496 - 23093410
Alignment:
Q  18 tttatgtcatcttaagttagttcaaccacaaattttttct------------tcaattagtttacttttccgctatcggttatagtct 93  Q
    |||||||||||| |||||||||||||||||||||||||||            ||||| ||||||||||||||||||||||||||||||    
T  23093496 tttatgtcatct-aagttagttcaaccacaaattttttctaacattactaattcaatcagtttacttttccgctatcggttatagtct 23093410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 44762256 - 44762154
Alignment:
Q  353 tcatcttagccacctcagattttcctgttgacctaaaataactctcagtgcagaggatttgccaataggcatcttcgtttccgtcgaaaagtgaaagctc 452  Q
    ||||||| |||| ||| |||||||| |||| ||| |||||||| |||||  |||||||   ||| ||||||||||| | ||||||||| || ||||||||    
T  44762256 tcatctttgccatctcggattttccggttgccctgaaataactttcagtagagaggatccaccagtaggcatcttcatctccgtcgaatagagaaagctc 44762157  T
Q  453 cat 455  Q
    |||    
T  44762156 cat 44762154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 553 - 813
Target Start/End: Original strand, 42635312 - 42635569
Alignment:
Q  553 atacaatcaatatgttgcaggaatctaatattcaaggtgcttatgtggtactataccaaatttgagttcaatgacatgagaactgtaggaatagaaaaga 652  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42635312 atacaatcaatatgttgcagga-tctaatattcaaggtgcttatgtggtactataccaaatttgagttcaatgacatgagaactgtaggaatagaaaaga 42635410  T
Q  653 cagacatacagcacatggcgttgtccatgtggtcctaaatgaggccgaaagtgaaaagaaattatccacctcattaacaaccacagcctgcatcaaaaat 752  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42635411 cagacatacagca--tggtgttgtccatgtggtcctaaatgaggccgaaagtgaaaagaaattatccacctcattaacaaccacagcctgcatcaaaaat 42635508  T
Q  753 agaaataaacaaattaggaggtaaatatgataaatgaacgttcaaaaatgtgcatcacgtc 813  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42635509 agaaataaacaaattaggaggtaaatatgataaatgaacgttcaaaaatgtgcatcacgtc 42635569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 5e-96
Query Start/End: Original strand, 1010 - 1224
Target Start/End: Original strand, 42635724 - 42635938
Alignment:
Q  1010 aagctcacttaccacctcctaaagattatgtagcatagacacttcatattgaaaatgcgtctggagtacttcatattgaagatgcatctggagcctgaca 1109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||||| ||||||||||||||    
T  42635724 aagctcacttaccacctcctaaagattatgtagcatagacacttcatactgaagatgcgtctagagcacttcatattgaagatgcgtctggagcctgaca 42635823  T
Q  1110 caagtcaggatccaacactgacacgtattgtataaaatcacttttatttttcttaaattattattatatgcggtctcctgtttctgtgcaagtgctttgt 1209  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  42635824 caagtcagtatccaacactgacacatattgtataaaatcacttttatttttcttaaattattattatgtgcggtctcttgtttctgtgcaagtgctttgt 42635923  T
Q  1210 atcctataacaccat 1224  Q
    |||||||||||||||    
T  42635924 atcctataacaccat 42635938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 906 - 944
Target Start/End: Original strand, 42635686 - 42635724
Alignment:
Q  906 ttgaaacaatagctgttcataagtatacatacctccata 944  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42635686 ttgaaacaatagctgttcataagtatacatacctccata 42635724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 610 - 760
Target Start/End: Complemental strand, 7229089 - 7228945
Alignment:
Q  610 aaatttgagttcaatgacatgagaactgtaggaatagaaaagacagacatacagcacatggcgttgtccatgtggtcctaaatgaggccgaaagtgaaaa 709  Q
    ||||||| |||||||||| ||||||||||| |||||||||||  |||| |||||||  |||  ||||||| ||||||||||||||||||||||| |||||    
T  7229089 aaatttgcgttcaatgacttgagaactgtaagaatagaaaagtaagacttacagca--tggtattgtccacgtggtcctaaatgaggccgaaagagaaaa 7228992  T
Q  710 gaaattatccacctcattaacaaccacagcctgcatcaaaaatagaaataa 760  Q
    |||    ||||||||||||||||||||||||||||||| ||| | ||||||    
T  7228991 gaa----tccacctcattaacaaccacagcctgcatcagaaaaataaataa 7228945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 898 - 976
Target Start/End: Complemental strand, 7228671 - 7228593
Alignment:
Q  898 tgaaaagattgaaacaatagctgttcataagtatacatacctccatatttgggtgctgagacaaaagattggacaagtg 976  Q
    ||||||| |||||||||||| || | |||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  7228671 tgaaaaggttgaaacaatagatgctgataagtatacataccttcatatttgggtgctgagacaaaaggttggacaagtg 7228593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1096 - 1224
Target Start/End: Complemental strand, 7228417 - 7228292
Alignment:
Q  1096 tctggagcctgacacaa-gtcaggatccaacactgacacgtattgtataaaatcacttttatttttcttaaattattattatatgcggtctcctgtttct 1194  Q
    ||||||||||||||||| ||||| |||||||||||||||  |||| |  |||||||||| | ||||||||||||||||| |  ||  || ||| || |||    
T  7228417 tctggagcctgacacaaagtcagtatccaacactgacac--attgcactaaatcactttca-ttttcttaaattattatca-gtgttgtgtccagtgtct 7228322  T
Q  1195 gtgcaagtgctttgtatcctataacaccat 1224  Q
    |||||||||||||||| |||||||||||||    
T  7228321 gtgcaagtgctttgtagcctataacaccat 7228292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 8e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 631 - 747
Target Start/End: Original strand, 49598722 - 49598832
Alignment:
Q  631 agaactgtaggaatagaaaagacagacatacagcacatggcgttgtccatgtggtcctaaatgaggccgaaagtgaaaagaaattatccacctcattaac 730  Q
    ||||||||| |||||||||||  |||| |||||||  |||   |||||| ||||||||||||||||||||||| ||||||||    ||||||||||||||    
T  49598722 agaactgtaagaatagaaaagtaagacttacagca--tggtactgtccacgtggtcctaaatgaggccgaaagagaaaagaa----tccacctcattaac 49598815  T
Q  731 aaccacagcctgcatca 747  Q
    |||||||||||||||||    
T  49598816 aaccacagcctgcatca 49598832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 455 - 529
Target Start/End: Complemental strand, 12638160 - 12638086
Alignment:
Q  455 taatacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaatt 529  Q
    |||||||||||||||||| |||| |||||| |||| |||||||||||| || ||||| |||||||||||||||||    
T  12638160 taatacgacccaattcgagtaggtatcgcactccagaaattaagagagaaatctagatataaaagaaaggaaatt 12638086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 926 - 976
Target Start/End: Original strand, 49599089 - 49599139
Alignment:
Q  926 aagtatacatacctccatatttgggtgctgagacaaaagattggacaagtg 976  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  49599089 aagtatacataccttcatatttgggtgctgagacaaaaggttggacaagtg 49599139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 36050811 - 36050739
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaatt 529  Q
    |||||||||||||||| |||||||| || |||| ||||||| |||| |||||||| |||||||||| ||||||    
T  36050811 atacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaatt 36050739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 36054070 - 36053998
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaatt 529  Q
    |||||||||||||||| |||||||| || |||| ||||||| |||| |||||||| |||||||||| ||||||    
T  36054070 atacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaatt 36053998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 24733968 - 24733877
Alignment:
Q  301 caccatagccaccatagaagaccatgacctcacatagtcaacgcaaccactgtcatcttagccacctcagattttcctgttgacctaaaata 392  Q
    ||||||||||||||| ||||| || |||||| |||||||||  |||||||  ||||||| || ||||| ||||||| ||||| ||| |||||    
T  24733968 caccatagccaccatcgaagagcaggacctctcatagtcaaatcaaccaccatcatctttgcaacctctgattttcgtgttgccctgaaata 24733877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 41712440 - 41712368
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaatt 529  Q
    |||||||||||||||| || ||||| || |||| |||||||||||| |||||||| | |||||||||||||||    
T  41712440 atacgacccaattcgagtaaggatcacactccaaaaattaagagagaaaactagagacaaaagaaaggaaatt 41712368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 457 - 528
Target Start/End: Complemental strand, 49017275 - 49017204
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaatta-agagaggaaactagaaataaaagaaaggaaat 528  Q
    |||||||| |||||||||||||||| || ||||||||||| ||||| ||||||||| ||||||||||| ||||    
T  49017275 atacgacctaattcgaatagggatcacactccataaattagagaga-gaaactagagataaaagaaagaaaat 49017204  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 457 - 519
Target Start/End: Complemental strand, 6103051 - 6102989
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaag 519  Q
    |||| ||||||||||| |||| ||| || ||||||||||||||||| |||||||| |||||||    
T  6103051 atacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaag 6102989  T

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Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 31211961 - 31211889
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaatt 529  Q
    |||||| ||||||||| |||||||| || |||| |||||||||||| |||||||| ||||||||||| |||||    
T  31211961 atacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaagaaaatt 31211889  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 31193318 - 31193253
Alignment:
Q  464 ccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaatt 529  Q
    ||||||||| |||||||| || || | |||||||||||| |||||||| || |||||||| |||||    
T  31193318 ccaattcgagtagggatcacactctagaaattaagagagaaaactagagatgaaagaaagaaaatt 31193253  T

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Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 18583888 - 18583960
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaattaagagaggaaactagaaataaaagaaaggaaatt 529  Q
    |||||||||||||||| ||| |||  || |||| |||||||||||| |||||||| |||||||||||||||||    
T  18583888 atacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaagaaaggaaatt 18583960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 33242996 - 33242924
Alignment:
Q  457 atacgacccaattcgaatagggatcgcattccataaattaagagag-gaaactagaaataaaagaaaggaaatt 529  Q
    |||||||||||||||| ||| |||| || |||| |||||| ||||| |||||||||||||||||||| ||||||    
T  33242996 atacgacccaattcgagtagagatcacactccagaaatta-gagagagaaactagaaataaaagaaaagaaatt 33242924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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