View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8974_low_10 (Length: 440)
Name: NF8974_low_10
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 2238539 - 2238963
Alignment:
| Q |
1 |
aatgtaattatactaacccattataataagttccagacatggtaacaactgctgcaggatgattatccaaatgagtcaaccaaacaagctcaccagttct |
100 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2238539 |
aatgtaatt-tactaacccattgtaataagttccagacatggtaacaactcctgcagggtgattatccaaatgagtcaaccaaacaagctcaccagttct |
2238637 |
T |
|
| Q |
101 |
cctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttcagccactgttggagttgctctagccactgtccaatttgcatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
2238638 |
cctttcaagaccaataacaacagcaggtccataaattccaacaatcaacaaatcttcagccacagttggagttgctctagccaatgtccaatttgcatta |
2238737 |
T |
|
| Q |
201 |
attataaatccagttgtattcaaacctgtcaatttctccaagttttgcttccaaacaagtgacccatcaatttgtttaattgcatatatgttaccattcc |
300 |
Q |
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| T |
2238738 |
attataaatccagttgtatttaaacctgtcaatttctccaagttttgcttccaaacaagtgatccatcaacttgtttaattgcatatatgttaccattcc |
2238837 |
T |
|
| Q |
301 |
aacttggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgtttgcatagaatttccacttcaaacttagtttaggtaccgtttc |
400 |
Q |
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| T |
2238838 |
agcttggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgtttgcatagaatttccacttcaaacttagtttaggtaccgtttc |
2238937 |
T |
|
| Q |
401 |
tatatttatcttttgttccttgtatg |
426 |
Q |
| |
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| T |
2238938 |
tatatttatcttttgttccttgtatg |
2238963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 2229577 - 2230002
Alignment:
| Q |
1 |
aatgtaattatactaacccattataataagttccagacatggtaacaactgctgcaggatgattatccaaatgagtcaaccaaacaagctcaccagttct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
2229577 |
aatggaattatactaacccattataataagttccagacatggtaataactcctgcaggatgattatccaaatgggtcaaccaaataagctcaccagttct |
2229676 |
T |
|
| Q |
101 |
cctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttcagccactgttggagttgctctagccactgtccaatttgcatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || |
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| T |
2229677 |
cctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttcagccacagttggagttgctctagccactgaccaatttacagct |
2229776 |
T |
|
| Q |
201 |
attataaatccagttgtattcaaacctgtcaatttctccaagttttgcttccaaacaagtgacccatcaatttgtttaattgcatatatgttaccattcc |
300 |
Q |
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| |||| |||||||| ||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2229777 |
ttgataattccagttgcatttaaacctgtcaattcctccaaattttgcttccaaacaagtgatccatcaatttgtttaattgcatatatgttaccattcc |
2229876 |
T |
|
| Q |
301 |
aacttggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgtttgcatagaatttccacttcaaacttagtttaggtaccgtttc |
400 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||| |
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| T |
2229877 |
agcatggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgcctgcattgaatttccacttcaaacttaggttagaaaccgtttc |
2229976 |
T |
|
| Q |
401 |
tatatttatcttttgttccttgtatg |
426 |
Q |
| |
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| ||| ||||| ||||| ||||||| |
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|
| T |
2229977 |
tggattgatcttgtgttcattgtatg |
2230002 |
T |
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