View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8974_low_11 (Length: 365)
Name: NF8974_low_11
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 4858345 - 4858675
Alignment:
| Q |
15 |
agcacaaacattataatgatttgagtgtgacctatgttatcaatatgaaaatcttgtcggttggttgataatattttgta-aacatttgttgaatcttat |
113 |
Q |
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| T |
4858345 |
agcacaaacattataatgatttgagtgtgaactatgttgtcaatatgaaaatcttgtcggttggttgataatattttgtataacatttgttgaatcttat |
4858444 |
T |
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| Q |
114 |
gattttactgagtttcatgattatttattcttgagaggctaaattgaattggttcattgcaaacaagtgtgattgtgactattgagctatgttatgttca |
213 |
Q |
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| T |
4858445 |
gattttactaagtttcaagattatttattcttgagaggctaaattgaattggttcattgcaaacaagtgtgattgtgactattgag-tatgttatgttca |
4858543 |
T |
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| Q |
214 |
cgtaacaagcttttacatacaataaattgtacattgaattcagaataaataaaagatgtattgttatcaaatatcaaagaaaatac--nnnnnnnnngaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4858544 |
cgtaacaagcttttacatacaataaattgtacattgaattctgaataaataaaagatgtattgttatcaaatatcaaagaaaatacatattttttttgaa |
4858643 |
T |
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| Q |
312 |
ggaaaaagaaaatacattgtaaaggtcaattt |
343 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4858644 |
ggaaaaagaaaatacattgtaaaggtcaattt |
4858675 |
T |
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