View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8974_low_12 (Length: 313)
Name: NF8974_low_12
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 46411442 - 46411732
Alignment:
| Q |
20 |
caatgtaggcatgttttctcttgctcataccttgtttcgtcgatctgatgatgaaaatgaagatgtttgacactgatacatttgttggatcgtgaggagt |
119 |
Q |
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| T |
46411442 |
caatgtaggcacgttttctcttgctcataccttgttccgtcgatctgacgatgaaaatgaagatgtttgacactgatacatttgttggatcgtgaggagt |
46411541 |
T |
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| Q |
120 |
gtctgggaaatcatccatattagacaaaaagcaataacacagaaaattttacagcacatctttatcaaaaatcttaaagcatttggtttataagtcctct |
219 |
Q |
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| T |
46411542 |
gtctgggaaatcatccatattagacaaaaagcaataaca--gaaaattttacagcacatctttatcaaaaatcttaaagcatttggtttataagtcctct |
46411639 |
T |
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| Q |
220 |
cacttacacatcgttcaaccttcactttttctagcaatgtggaacttcaaactcacttgctacacaacaatctctcttcaccaccaaactcga |
312 |
Q |
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| T |
46411640 |
cacttacacattgttcaaccttcactttttctagcaatgtggaacttcaaactcacttgctacacaacagtctctcttcaccaccaatctcga |
46411732 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 37660896 - 37660958
Alignment:
| Q |
213 |
gtcctctcacttacacatcgttcaaccttcactttttctagcaatgtggaacttcaaactcac |
275 |
Q |
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| T |
37660896 |
gtcctctcacttatatgttgttcaaccttcactttttcaagcaatttgggacttctaactcac |
37660958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 50081137 - 50081207
Alignment:
| Q |
204 |
ggtttataagtcctctcacttacacatcgttcaaccttcactttttctagcaatgtggaacttcaaactca |
274 |
Q |
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| T |
50081137 |
ggtttataagttttctcacttataaaatgttcagcctccactttttcaagcaatgtggaacttctaactca |
50081207 |
T |
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