View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8974_low_16 (Length: 221)

Name: NF8974_low_16
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8974_low_16
NF8974_low_16
[»] chr1 (3 HSPs)
chr1 (16-204)||(4656688-4656876)
chr1 (144-200)||(1038461-1038517)
chr1 (144-200)||(1045367-1045423)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 4656876 - 4656688
Alignment:
Q  16 gttgtgaagtactatttgcttcagttttcacagcagagtgttgttgatgttgtacttgatcagactgaaaacaattgtctgatccatgaaagttgttcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4656876 gttgtgaagtactatttgcttcagttttcacagcagagtgttgttgatgttgtacttgatcagactgaaaacaattgtctgatccatgaaagttgttcat 4656777  T
Q  116 tggaatctgattatgttgatgattgtgttggtgttggtgttggttgtttccactagcaatggagtataagaaatttggccttgaatttg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4656776 tggaatctgattatgttgatgattgtgttggtgttggtgttggttgtttccactagcaatggagtataagaaatttggccttgaatttg 4656688  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 1038461 - 1038517
Alignment:
Q  144 tggtgttggtgttggttgtttccactagcaatggagtataagaaatttggccttgaa 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1038461 tggtgttggtgttggttgtttccactagcaatggagtacaagaaatttggccttgaa 1038517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 1045367 - 1045423
Alignment:
Q  144 tggtgttggtgttggttgtttccactagcaatggagtataagaaatttggccttgaa 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1045367 tggtgttggtgttggttgtttccactagcaatggagtacaagaaatttggccttgaa 1045423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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