View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8974_low_2 (Length: 720)
Name: NF8974_low_2
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 22 - 702
Target Start/End: Complemental strand, 14060735 - 14060052
Alignment:
| Q |
22 |
caagcctgcaaacttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaactatc |
121 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
14060735 |
caagcatgcaaacttttgcttaacaagattgaagataatattgaagaattgaagaacatgttcactgaagatgcaattgaaggattcaatgacaatgatc |
14060636 |
T |
|
| Q |
122 |
ttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaagtttgatcgatt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
14060635 |
ttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaagtttgaccaatt |
14060536 |
T |
|
| Q |
222 |
gatgtacatatggagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgaaagaggcattgatttgaacttttta |
321 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14060535 |
gatgtatatatggagagatgtttcgttgttagagaaccaacttccataccaaatgcttgagattatatgcaatgaaagaggcattgatttgaacttttta |
14060436 |
T |
|
| Q |
322 |
gttaacaattttcaagatatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttcatatactagattcttcgcgct |
421 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14060435 |
gttaacaattatcagggtatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttcatatactagattcttcgcgct |
14060336 |
T |
|
| Q |
422 |
tgatgtacttgacctctgatttgggaatcgacattgaagaacaaggtcggatggaaacacaatcagaaggaaaagaacccaatcaaactgggggaaatac |
521 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
14060335 |
tgatgtacttgacgtccgatttgggaatcgacgttgaagaacaaggtcagatggaaacacaatcagaaggaaatgaacccaatcaaaccggggaaaatac |
14060236 |
T |
|
| Q |
522 |
aaccttaaaccaagaagatgat---gatgaagaagttcttagttgtaattggaatacatataaaagcataagggatctaaaaatagtaggaattcacgtg |
618 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
14060235 |
aaccttaaaccaagaagatgatgacgatgaagaagttcttagttgtaattggaatacttataaaagcataagggatctaaaaataataggaattcgagtg |
14060136 |
T |
|
| Q |
619 |
aaaccaaataaggtggatgcatggacatggagtaacgtttccttcaagtctaagtggttgagtggagaactacgacttcctatt |
702 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14060135 |
aaaccaaataagacagatgcatggacatggagtaacgtttctttcaagtctaagtggttgagtggagaactaagacttcctatt |
14060052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 12 - 702
Target Start/End: Complemental strand, 14049374 - 14048681
Alignment:
| Q |
12 |
agatggacatcaagcctgcaaacttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaat |
111 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14049374 |
agatggccaccaagcctgcaaacttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaat |
14049275 |
T |
|
| Q |
112 |
gacaactatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaagt |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14049274 |
gacaacgatcttgcttggatattgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggctaaatcttaagt |
14049175 |
T |
|
| Q |
212 |
ttgatcgattgatgtacatatggagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgaaagaggcattgattt |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14049174 |
ttgatcaattgatgtacatatggagagatgttaagttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgcaagaggcattgattt |
14049075 |
T |
|
| Q |
312 |
gaactttttagttaacaattttcaagatatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttcatatactagat |
411 |
Q |
| |
|
||| |||||||||| ||||| ||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14049074 |
gaattttttagttagcaattatcagggtatgggtgcatgtaaacgttatggaatgacattgattccattgaaaaatcctaaaccatttcatatactagat |
14048975 |
T |
|
| Q |
412 |
tcttcgcgcttgatgtacttgacctctgatttgggaatcgacattgaagaacaaggtcggatggaaacacaatcagaaggaaaagaacccaatcaaactg |
511 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
14048974 |
tcttcgcgcttgatgtacttgacgtccgatttgggaatcgacattgaagaacaaggtcagatggaaacacattcagaaggaaatgaacccaatcaaacag |
14048875 |
T |
|
| Q |
512 |
ggggaaatacaaccttaaaccaagaagatgatg---atgaagaagttcttagttgtaattggaatacatataaaagcataagggatctaaaaatagtagg |
608 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
14048874 |
gggaaaatacaaccttaaaccaagaagatgatgatgatgaagaagttcttagttgttaatggaatacttataaaagcataagggatctaaaaatggtagg |
14048775 |
T |
|
| Q |
609 |
aattcacgtgaaaccaaataaggtggatgcatggacatggagtaacgtttccttcaagtctaagtggttgagtggagaactacgacttcctatt |
702 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14048774 |
aattcgagtgaaaccaaataagacagatgcatggacatggagtaacgtttccttcaagtctaagtggttgagtggagaactacgacttcctatt |
14048681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 34 - 412
Target Start/End: Original strand, 15899761 - 15900139
Alignment:
| Q |
34 |
cttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaactatcttgcttggatat |
133 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| || |||||||||||||| | |||||| || ||||||||||||||| |
|
|
| T |
15899761 |
cttttgcttaaaaagattgaagataatattgaagatttgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatat |
15899860 |
T |
|
| Q |
134 |
tgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaagtttgatcgattgatgtacatatg |
233 |
Q |
| |
|
|||| |||||||||||||| |||||||| || |||| |||||| |||||||||| || || | ||||| ||||||||||| | | ||||| ||||||| |
|
|
| T |
15899861 |
tgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatg |
15899960 |
T |
|
| Q |
234 |
gagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaatgaaagaggcattgatttgaactttttagttaacaatttt |
333 |
Q |
| |
|
||||||| || ||||||||||| ||||||||| | ||||||||||||| ||||| | |||| | |||||||| | |||||| ||||||||| | |
|
|
| T |
15899961 |
gagagatacttttttgttggagaatcaacttccaaaaataatgcttgagattctatgcgaagaaacgagtgttgatttggattttttaattaacaattct |
15900060 |
T |
|
| Q |
334 |
caagatatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttcatatactagatt |
412 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||| | | |||| |||||| ||| || |||||| |||| |||| |
|
|
| T |
15900061 |
tttgcaatgggtgcatgcaaacgacttggaatggcaatgctccaattggaaaatcataagccctttcatttacttgatt |
15900139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 34 - 293
Target Start/End: Original strand, 15920789 - 15921048
Alignment:
| Q |
34 |
cttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaactatcttgcttggatat |
133 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | | |||||||| |||||||| || |||||||||||||| | |||||| || ||||||||||||||| |
|
|
| T |
15920789 |
cttttgcttaaaaagattgaagataatattgaatatttgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatat |
15920888 |
T |
|
| Q |
134 |
tgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaagtttgatcgattgatgtacatatg |
233 |
Q |
| |
|
|||| |||||||||||||| |||||||| || |||| |||||| |||||||||| || || | ||||| ||||||||||| | | ||||| ||||||| |
|
|
| T |
15920889 |
tgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatg |
15920988 |
T |
|
| Q |
234 |
gagagatgtttcgttgttggagaaccaacttccataccaaatgcttgagattatatgcaa |
293 |
Q |
| |
|
||||||| | ||||| |||||||| |||||| || |||||||||||||| ||||||| |
|
|
| T |
15920989 |
gagagatactaatttgttagagaaccagcttccaaacaaaatgcttgagattctatgcaa |
15921048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 34 - 702
Target Start/End: Complemental strand, 15874308 - 15873639
Alignment:
| Q |
34 |
cttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaactatcttgcttggatat |
133 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | | ||||||| |||||||| || |||||||||||||| | |||||| || ||||||||||||||| |
|
|
| T |
15874308 |
cttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatat |
15874209 |
T |
|
| Q |
134 |
tgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaa-gggctaaatcttaagtttgatcgattgatgtacatat |
232 |
Q |
| |
|
|||| |||||||||||||| |||||||| || ||||||||||| |||||||||| |||||| | ||||| ||||||||||| | | ||||| |||||| |
|
|
| T |
15874208 |
tgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaat-gcccgaatgccctaaaccttaagtttgaccaactgatgcacatat |
15874110 |
T |
|
| Q |
233 |
ggagagatgtttcgttgttggagaaccaacttccatacca-aatgcttgagattatatgcaatgaaagaggcattgatttgaactttttagttaacaatt |
331 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| | | ||||||||||||| ||||| | |||| || ||||||||| | |||||| ||||||||| |
|
|
| T |
15874109 |
ggagagatactttattgttggagaatcaacttcccaagaataatgcttgagattctatgcgaagaaatgggtattgatttggaatttttaattaacaatt |
15874010 |
T |
|
| Q |
332 |
ttcaagatatgggtgcatgcaaacgttatggaatgacaatgattccattgaaaaatcctaaaccatttcatatactagattcttcgcgcttgatgtactt |
431 |
Q |
| |
|
| |||||||||| || |||||| ||||||| ||| | |||| |||||||||| || ||||||||||| |||| | | || | ||||||| |
|
|
| T |
15874009 |
cttttgatatgggtgaatccaaacgacttggaatggtaatagtcaaattggaaaatcctaagccctttcatatacttgattttgctcgttcagtgtactt |
15873910 |
T |
|
| Q |
432 |
gacctctgatttgggaatcgacattgaagaacaaggtcggatggaaacacaatcagaaggaaaagaacccaatcaaactgggggaaatacaaccttaaac |
531 |
Q |
| |
|
| | | || ||| | ||||||||||||| ||| |||||||||||||| ||||||| |||| |||| | || ||||| ||| | || |
|
|
| T |
15873909 |
gccacccaatatggtttccaacattgaagaacatggtaaaatggaaacacaatctgaaggaagtgaacacaattcgatgaggaaaaataaaactcaagac |
15873810 |
T |
|
| Q |
532 |
caagaagatgatgatgaagaagttcttagttgtaattggaatacatataaaagcataagggatctaaaaatagtaggaattcacgtgaaaccaaataagg |
631 |
Q |
| |
|
||||||||| |||||| |||| ||| || ||||||||||| ||||| |||||| |||||||||| | |||||||||||| ||| | |||||||| |
|
|
| T |
15873809 |
caagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcaagtggtagcaaataaga |
15873710 |
T |
|
| Q |
632 |
tggatgcatggacatggagtaacgtttccttcaagtctaagtggttgagtggagaactacgacttcctatt |
702 |
Q |
| |
|
|||| |||| ||||||||| |||| |||| |||||| ||||| | |||||||||| | ||||||||| |
|
|
| T |
15873709 |
cagatgagtggaactggagtaacatttcgttcacgtctaaatggtttaatggagaactaaggcttcctatt |
15873639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 702
Target Start/End: Original strand, 15900271 - 15900408
Alignment:
| Q |
565 |
aattggaatacatataaaagcataagggatctaaaaatagtaggaattcacgtgaaaccaaataaggtggatgcatggacatggagtaacgtttccttca |
664 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||| |||||||||||| ||| | |||||||| ||| ||||| ||||||||| |||| |||| |
|
|
| T |
15900271 |
aattggaatacttataagagcatacgggatctaaaaacagtaggaattcaagtggtagcaaataagacagataagtggacctggagtaacatttctttca |
15900370 |
T |
|
| Q |
665 |
agtctaagtggttgagtggagaactacgacttcctatt |
702 |
Q |
| |
|
||||||| ||||| ||||| |||||| | ||||||||| |
|
|
| T |
15900371 |
agtctaaatggtttagtggcgaactaaggcttcctatt |
15900408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 530 - 701
Target Start/End: Original strand, 15921286 - 15921457
Alignment:
| Q |
530 |
accaagaagatgatgatgaagaagttcttagttgtaattggaatacatataaaagcataagggatctaaaaatagtaggaattcacgtgaaaccaaataa |
629 |
Q |
| |
|
|||||||||| |||||| |||| | ||| || |||||||||||| ||||| |||||| |||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
15921286 |
accaagaagacagtgatgaggaagatattaattttaattggaatacttataagagcatacgggatctaaaaacagtaggaattcgagtggtagcaaataa |
15921385 |
T |
|
| Q |
630 |
ggtggatgcatggacatggagtaacgtttccttcaagtctaagtggttgagtggagaactacgacttcctat |
701 |
Q |
| |
|
| |||| |||| ||||||||| |||| ||||||||||| ||||| ||||||||| || | |||||||| |
|
|
| T |
15921386 |
gacagatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaattaaggcttcctat |
15921457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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