View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8974_low_4 (Length: 598)
Name: NF8974_low_4
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_4 |
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| [»] scaffold0054 (4 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 37853 - 38435
Alignment:
| Q |
1 |
ttctctaaatgaactcaccattgcatttgttgcaggcagtgatttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcc |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37853 |
ttctctagatgaactcaccattgcatttgttgcagggagtggtttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcc |
37952 |
T |
|
| Q |
101 |
taaccctaagtaaccactgaccttctcaatctcctttactattttacttttcggatatattttcgatctcccaatagttaacatacgttttattttctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37953 |
taaccctaagtaaccactgaccttctcaatctccttttctattttacttttcggatatattttcgatctcccaatagttaacatacgttttattttctct |
38052 |
T |
|
| Q |
201 |
tacaaaaatatatgagaatttcttctcccccatacactatttgtttattattcccgattcgcccctctctgagttaaccaatctgggtgattctgtagnn |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38053 |
tacaaaaatatatgagaatttcttctgccccatacactatttgtttattattcccgattcgcccctctctgagttaacaaatctgggtgattctgtagaa |
38152 |
T |
|
| Q |
301 |
nnnnngacgcataagaaagtgacagttttaatttgtgtttgtttccaatttactgtttaggttatgtttaccaatgtcgtcgataatattggtctacgca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38153 |
aaaaagacgcataagaaagtgacagttttaatttgtgtttgtttccaatttactgtttaggttatgtttaccaatgtcgtcgataatattggtctacgca |
38252 |
T |
|
| Q |
401 |
atcttcacaagcatttgaagaactcactgagatgaattttggtgttggatcccttccgctcatactctttcgtcattatcaaaacttccaatacacccca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38253 |
atcttcacaagcatttgaagaactcactgagatgaattttggtgttgga--ccttccgctcatactctttcgtcattatcaaaacttccaatacacccca |
38350 |
T |
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| Q |
501 |
caaaaccgcacttgacgtccacaacagctttccagaacaacaaaggcactcactgttactcactctaaacaaaccacgaccacca |
585 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38351 |
caaaaccgcacttgacgtccacaagagctttccaaaacaacaaaggcactcaccgttactcactctaaacaaaccacgaccacca |
38435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 40812 - 41084
Alignment:
| Q |
16 |
caccattgcatttgttgcaggcagtgatttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaacc |
115 |
Q |
| |
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|||| ||||||||||||||| | |||||| |||| |||| |||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
40812 |
cacctttgcatttgttgcagccgttgatttgttctccatcgacacgacacgaagagaatcgaactttgcttgcaaattgcaatcctaaccctaagtaacc |
40911 |
T |
|
| Q |
116 |
actgaccttctcaatctcctttactattttacttttcggatatattttcgatctcccaatagttaacatacgttttattttctcttacaaaaatatatga |
215 |
Q |
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|| |||||||||||||||||| || ||||| |||| | | || ||||| |||||| ||||||||||| | ||||| || |||||| |||||||||||| |
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| T |
40912 |
tctaaccttctcaatctccttttcttttttaatttttgtaaatgttttcaatctcctaatagttaacacaagtttttttgtctcttcaaaaaatatatga |
41011 |
T |
|
| Q |
216 |
gaatttcttctcccccatacactatttgtttattattcccgattcgcccctctctgagttaaccaatctgggtga |
290 |
Q |
| |
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||||||||||| | |||| ||| |||| |||||||| ||| |||||||||| ||||||||||||||||| |
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| T |
41012 |
gaatttcttct--cttgtacattatccgttttttattcccaatttgcccctctctagattaaccaatctgggtga |
41084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 49523 - 49671
Alignment:
| Q |
62 |
agacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaaccactgaccttctcaatctcctttactattttacttttcggatatatt |
161 |
Q |
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||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||| ||||| |
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| T |
49523 |
agacgaagagagtcgaactttgcttgtatattgcaatctgaaccctaagtaaccaatgaccttctcaatctccttttctattttaccttttggaaatatt |
49622 |
T |
|
| Q |
162 |
ttcgatctcccaatagttaacatacgttttattttctcttacaaaaata |
210 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||||| ||||||| |
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| T |
49623 |
ttcgatctcccaatagttaacatatgttttgttttctcttaaaaaaata |
49671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 34455 - 34572
Alignment:
| Q |
16 |
caccattgcatttgttgcaggcagtgatttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaacc |
115 |
Q |
| |
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|||| ||||||||||||||| | |||||||||||||||| |||| ||| ||||||| | |||||||||||||||||| |||||||||||| |||||||| |
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| T |
34455 |
cacctttgcatttgttgcagccgctgatttcttcttcatcgacacgagatgaagagaatcgaactttgcttgcaaatttcaatcctaacccaaagtaacc |
34554 |
T |
|
| Q |
116 |
actgaccttctcaatctc |
133 |
Q |
| |
|
|||||||||||||||||| |
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| T |
34555 |
actgaccttctcaatctc |
34572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 13339124 - 13338974
Alignment:
| Q |
21 |
ttgcatttgttgcaggcagtgatttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaaccactga |
120 |
Q |
| |
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||||| ||||||||| | ||||||||||| |||| |||| ||||||||||||| | | ||| ||||||||||||||| ||||||||||||||||||| | |
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| T |
13339124 |
ttgcaattgttgcagcctctgatttcttctccatcgacacgagacgaagagagtcggattttacttgcaaattgcaattctaaccctaagtaaccactaa |
13339025 |
T |
|
| Q |
121 |
ccttctcaatctcctttactattttacttttcggatatattttcgatctcc |
171 |
Q |
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||||||||||||||||| || ||||| | || ||| |||||||| |||||| |
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| T |
13339024 |
ccttctcaatctccttttcttttttaatgtttggaaatattttcaatctcc |
13338974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 24415328 - 24415371
Alignment:
| Q |
311 |
ataagaaagtgacagttttaatttgtgtttgtttccaatttact |
354 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
24415328 |
ataagaaagtgacagttttagttttggtttgtttccaatttact |
24415371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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