View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8974_low_5 (Length: 531)
Name: NF8974_low_5
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Original strand, 4858345 - 4858850
Alignment:
| Q |
15 |
agcacaaacattataatgatttgagtgtgacctatgttatcaatatgaaaatcttgtcggttggttgataatattttgta-aacatttgttgaatcttat |
113 |
Q |
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| T |
4858345 |
agcacaaacattataatgatttgagtgtgaactatgttgtcaatatgaaaatcttgtcggttggttgataatattttgtataacatttgttgaatcttat |
4858444 |
T |
|
| Q |
114 |
gattttactgagtttcatgattatttattcttgagaggctaaattgaattggttcattgcaaacaagtgtgattgtgactattgagctatgttatgttca |
213 |
Q |
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| T |
4858445 |
gattttactaagtttcaagattatttattcttgagaggctaaattgaattggttcattgcaaacaagtgtgattgtgactattgag-tatgttatgttca |
4858543 |
T |
|
| Q |
214 |
cgtaacaagcttttacatacaataaattgtacattgaattcagaataaataaaagatgtattgttatcaaatatcaaagaaaatac-nnnnnnnnnngaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4858544 |
cgtaacaagcttttacatacaataaattgtacattgaattctgaataaataaaagatgtattgttatcaaatatcaaagaaaatacatattttttttgaa |
4858643 |
T |
|
| Q |
313 |
ggaaaaagaaaatacattgtaaaggtcaatttgttctgtgatcaacttatattttttctgttaattggtgcgtagactatgcgatgacnnnnnnnnnnnn |
412 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
4858644 |
ggaaaaagaaaatacattgtaaaggtcaatttagtttgtgatcaactgatattttttctgttaattggtgcgtagactatgtgatgac------aaaaaa |
4858737 |
T |
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| Q |
413 |
nnnnnnttaggtagataattatattttgagttattgtatttgtattttcagccaaaattatttcagatgtcccttgactaaaattttagattagtcattt |
512 |
Q |
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| T |
4858738 |
aaatatttaggtagataattatattttgagttattgtatttgtattttcagccaaaattatttcagatgtcccttgactaaaattttagattagtcattt |
4858837 |
T |
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| Q |
513 |
ccataactccata |
525 |
Q |
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| T |
4858838 |
ccataactccata |
4858850 |
T |
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