View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8974_low_8 (Length: 482)
Name: NF8974_low_8
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 464
Target Start/End: Complemental strand, 9551986 - 9551537
Alignment:
| Q |
15 |
agaagaacaaaaagtagaaaacaaacatctctcacaaaagcatactttataacatgaacacctctttgatgaattgaaatactaactatcccaacaacaa |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9551986 |
agaagaacaaaaagtagaaaacaaacatctcttacaaaagcatactttataacatgaacacttctttgatgaattgaaatactaactatcccaacaacaa |
9551887 |
T |
|
| Q |
115 |
cacatgacacaaaagaaacacctccaatgactgtgttcaaaccaatattgcgggtcccactttcttgaaaagagacaaggctagagaaaacatcacaagc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9551886 |
cacatgacacaaaagaaacacctccaatgactgtgttcaaaccaatattgcgggtcccactttcttgaaaagagacaagactagagaaaacatcacaagc |
9551787 |
T |
|
| Q |
215 |
accattgccaagagaaagaagagtgacaccagaaattgttggtgacaaatttaacaatttagacaatttttcaagtgaaggacaaaaataataggaagtt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9551786 |
accattgccaagagaaagaagagtgacaccagaaattgttggtgacaaattcaacaatttagacaatttttcaagtgaaggacaaaaataataggaagtt |
9551687 |
T |
|
| Q |
315 |
gtatttgccaacaaataaaacaaaattaagagacaaagaaacaaaaaggtataacctaataaagggaattttccaaatttgcaatagaaaatgtaaaggt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9551686 |
gtatttgccaacaaataaaacaaaattaagagacaaagaaacaaaaaggtataacctaataaagggaattttccaaatttgcaatagaaaatgtaaaggt |
9551587 |
T |
|
| Q |
415 |
aatcaatgtagccttgagagacacatgaattgttggatttaaggtacaaa |
464 |
Q |
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| T |
9551586 |
aatcaatgtagccttgagagacacatgaattgttggatttaaggtacaaa |
9551537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 201 - 460
Target Start/End: Original strand, 33701130 - 33701389
Alignment:
| Q |
201 |
aaaacatcacaagcaccattgccaagagaaagaagagtgacaccagaaattgttggtgacaaatttaacaatttagacaatttttcaagtgaaggacaaa |
300 |
Q |
| |
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||||||||| ||||||||| |||||||| |||||||||||||||| ||| |||||||| | | || | ||| || | || ||||| |||||||||| |
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| T |
33701130 |
aaaacatcattagcaccattaccaagagagagaagagtgacaccagcaatagttggtgaaagcctcaaaactttggagagattatcaagagaaggacaaa |
33701229 |
T |
|
| Q |
301 |
aataataggaagttgtatttgccaacaaataaaacaaaattaagagacaaagaaacaaaaaggtataacctaataaagggaattttccaaatttgcaata |
400 |
Q |
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|||| | |||| |||||| || || | ||| || | || || | || |||||||||| ||||| ||| ||||||||||| ||||||| ||||||||| |
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| T |
33701230 |
aatactcagaagctgtattagctaaaagatagaagagaaccaataaccatagaaacaaaagggtatgacccaataaagggaaatttccaattttgcaata |
33701329 |
T |
|
| Q |
401 |
gaaaatgtaaaggtaatcaatgtagccttgagagacacatgaattgttggatttaaggta |
460 |
Q |
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|||||||||||||||||||| |||||||| | |||||| | ||||| ||||||||||| |
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| T |
33701330 |
gaaaatgtaaaggtaatcaacatagccttgtgtgacacaagggttgtttgatttaaggta |
33701389 |
T |
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