View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8974_low_9 (Length: 468)
Name: NF8974_low_9
Description: NF8974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8974_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 202 - 455
Target Start/End: Complemental strand, 18359179 - 18358926
Alignment:
| Q |
202 |
gaagtgtaattattattctttttcaaaatatttccagctcaaggcaatggggagacccaaaagcaaacttttgtgaaggacaagaaaaaccattatcagg |
301 |
Q |
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| T |
18359179 |
gaagtgtaattattattgtttttcaaaatattttcagctcaaggcaatggggagacccaaaagcaaacttttgtgaaggacaagaaaaaccattatcagg |
18359080 |
T |
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| Q |
302 |
atccatgtatccaggaggaccagttccagcacagttggctttagagagagttataagagccatgaaaaagcctgtatacttgcttgacattaccacttta |
401 |
Q |
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| T |
18359079 |
atctatgtatccaggaggtccagttccagcacagttggctttagagagagttataagagccatgaaaaagcctgtatacttgcttgacattaccacttta |
18358980 |
T |
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| Q |
402 |
tcacagctgagaaaagatggccacccatcagtttatggacatggaggacatagg |
455 |
Q |
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| T |
18358979 |
tcacagctgagaaaagatggccacccatcagtttatggacatggaggacatagg |
18358926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 18359733 - 18359589
Alignment:
| Q |
14 |
ttgaaccttaattattaacataaccctaattatactacttataattttccctaattctattacatatatttctagaatcagtaaaatatataatgagcat |
113 |
Q |
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| T |
18359733 |
ttgaactttagttatcaacataaccctaattatactact---aatttttcctaattctattacatatttttctacaatccgaaaaagatataatgaactt |
18359637 |
T |
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| Q |
114 |
gagatatatcacataccctttgttgtac-tttaccataaaaaagagaa |
160 |
Q |
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| T |
18359636 |
aagatagatcacataccctttgttgtacttttaccataaaaaagagaa |
18359589 |
T |
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