View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_high_10 (Length: 269)
Name: NF8975_high_10
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 41886018 - 41885778
Alignment:
| Q |
9 |
gaagcagagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatgttgaccatgatgatcacaaacaagaattgagtcttt |
108 |
Q |
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| T |
41886018 |
gaagcaaagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatc-tattgaccatgatgatcacaaacaagaattgagtcttt |
41885920 |
T |
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| Q |
109 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
208 |
Q |
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| T |
41885919 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
41885820 |
T |
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| Q |
209 |
cgatcatggatattaccctaatcccattctaaagtctcgaac |
250 |
Q |
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| T |
41885819 |
cgatcatggatattatcctaatcccattctaaagtctcgaac |
41885778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 41828705 - 41828908
Alignment:
| Q |
9 |
gaagcagagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatgttgaccatgatgatcacaaacaagaattgagtcttt |
108 |
Q |
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| T |
41828705 |
gaagcaaagaaggaaagttgcagtgatggaaatatcagaatcaaagactttgaagctgatcatgttgaccatgatgatcacaaacaagaattgagtcttt |
41828804 |
T |
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| Q |
109 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
208 |
Q |
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| T |
41828805 |
ctcttgagaagctgaatcttgcaccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcac |
41828904 |
T |
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| Q |
209 |
cgat |
212 |
Q |
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|||| |
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| T |
41828905 |
cgat |
41828908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 34453490 - 34453608
Alignment:
| Q |
132 |
ccaaagaagaagaagttgcttgttttgaaccttaatggtttacttctccaccgatctatccacacttcccgtctcaccgatcatggatattaccctaatc |
231 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||||| |||| |||| ||||| |||| | ||||||| |
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| T |
34453490 |
ccaaagaagaagaagttgcttgtattgaacctgaatggttttctgctccaccgatctattcacactttccgtttcacagatcagggatgctgtcctaatc |
34453589 |
T |
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| Q |
232 |
ccattctaaagtctcgaac |
250 |
Q |
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| T |
34453590 |
ccattctaaagtctcgaac |
34453608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 41893802 - 41893734
Alignment:
| Q |
24 |
agttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatgttgaccatgatgatcacaaa |
92 |
Q |
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| T |
41893802 |
agttgcagtgacggaaatatcaaaatcaaagactctgaagctaatcatgttgaccttgatgatcacaaa |
41893734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 41896975 - 41896912
Alignment:
| Q |
9 |
gaagcagagaaggaaagttgcagtgatggaaatatcagaatcaaagactctgaagctgatcatg |
72 |
Q |
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| T |
41896975 |
gaagcaaagaaagagagttgcagtgatggaaatatcaaaatcaaagactctgaagctgatcatg |
41896912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 41902011 - 41901962
Alignment:
| Q |
24 |
agttgcagtgatggaaatatcagaatcaaagactc-tgaagctgatcatg |
72 |
Q |
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| T |
41902011 |
agttccagtgatggaaatatcaaaatcaaagactcttgaagctgatcatg |
41901962 |
T |
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