View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8975_high_16 (Length: 218)
Name: NF8975_high_16
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 18646873 - 18647066
Alignment:
| Q |
6 |
tggagaagcagagaatagagaaagaaagagtgaagggattactatacttactgttattgggtttgcgaacaaggccactgaaagtgaaggaacgtggttg |
105 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18646873 |
tggagaagaagaaaatagagaaagaaagagtggagggattactatacttactgttattgggtttgcgaacaaggccactgaaagtgaaggaacgtggttg |
18646972 |
T |
|
| Q |
106 |
atggttatgatgatcatggtgatgatgtggtaacttaaactccttcacattcagtttccatgatgatgaaggttcaactctcgcactttctccg |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18646973 |
acggttatgatgatcatggtgatgatgtggtaacttaaactccttcacattcagtttccatgatgatgaaggttcaactctcacactttctccg |
18647066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 18650130 - 18650310
Alignment:
| Q |
9 |
agaagcagagaatagagaaagaaagagtgaagggattactatacttactgttattgggtttgcgaacaaggccactgaaagtgaaggaacgtggttgatg |
108 |
Q |
| |
|
||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18650130 |
agaagaagaaaatggagaaagaaagagtggagggattactatacttactgttattgggtttgcgaacaaggccactgaaagtgaaggaacgtggttgacg |
18650229 |
T |
|
| Q |
109 |
gttatgatgatcatggtgatgatgtggtaacttaaactccttcacattcagtttccatgatgatgaaggttcaactctcgcactttctcc |
198 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
18650230 |
gttatgatgatc---------atgtggtaagttaaactccttcacattcagtttccatgatgatgaaggttcaactatcacactttctcc |
18650310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University