View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_high_6 (Length: 391)
Name: NF8975_high_6
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 4163081 - 4162849
Alignment:
| Q |
23 |
ataagttgaaaatgctaaatactttaatttcttaagttattctcattttgatccttaagttactgacgttagacacactttgacgctttgtgttggtttt |
122 |
Q |
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| T |
4163081 |
ataagttgaaaatgctaaatgctttaatttcttaagttgttctcattttgatccttaagttactgacattagacacactttgacgctttgtgttggtttt |
4162982 |
T |
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| Q |
123 |
ttgtttatgttagccaaaaaatttctatattttcttcttgttgttgagtcaggtgcatctaatcataatgctatgtatgtaggaaagatttccatagtca |
222 |
Q |
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| T |
4162981 |
ttgtttatgttagccaaaaattttctatattttcttcttgttgttgagtcgggtgcatctaatcataatgctatgtatgtaggaaagatttccatagtca |
4162882 |
T |
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| Q |
223 |
aataaaaaattgattgaaagaaccaaaatgtct |
255 |
Q |
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| T |
4162881 |
aatgaaaaattgattgaaagtaccaaaatgtct |
4162849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 4162783 - 4162741
Alignment:
| Q |
336 |
ttcaaagtgaaacctaaaataatttaaagggtcgaagtataat |
378 |
Q |
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| T |
4162783 |
ttcaaagtgaaacctaaaataatttaaagggtcgaagtgtaat |
4162741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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