View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8975_low_1 (Length: 702)

Name: NF8975_low_1
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8975_low_1
NF8975_low_1
[»] chr4 (24 HSPs)
chr4 (108-675)||(20872222-20872789)
chr4 (108-457)||(9886686-9887028)
chr4 (459-679)||(9886433-9886644)
chr4 (108-404)||(13267830-13268126)
chr4 (289-462)||(22201184-22201356)
chr4 (289-675)||(10057164-10057557)
chr4 (364-550)||(14185700-14185892)
chr4 (289-404)||(18554892-18555006)
chr4 (293-356)||(12230684-12230747)
chr4 (298-403)||(15888710-15888814)
chr4 (298-404)||(15871135-15871239)
chr4 (109-266)||(19727540-19727701)
chr4 (293-356)||(13559545-13559608)
chr4 (233-369)||(13235092-13235225)
chr4 (513-607)||(18555298-18555392)
chr4 (210-266)||(17419426-17419483)
chr4 (169-255)||(16588442-16588528)
chr4 (109-149)||(13559373-13559413)
chr4 (327-385)||(19727758-19727817)
chr4 (108-149)||(15870953-15870994)
chr4 (494-551)||(18321772-18321829)
chr4 (494-551)||(18453117-18453174)
chr4 (293-353)||(24046634-24046694)
chr4 (95-182)||(30275169-30275257)
[»] chr5 (13 HSPs)
chr5 (73-679)||(24564448-24565049)
chr5 (73-679)||(24605483-24606084)
chr5 (96-679)||(13938505-13939079)
chr5 (170-607)||(25581400-25581836)
chr5 (294-608)||(32948408-32948721)
chr5 (500-622)||(25581920-25582042)
chr5 (108-265)||(32948760-32948918)
chr5 (160-355)||(14137809-14138001)
chr5 (293-356)||(23909038-23909101)
chr5 (289-374)||(25791666-25791750)
chr5 (210-266)||(25791773-25791830)
chr5 (293-353)||(24830079-24830139)
chr5 (293-353)||(36460882-36460942)
[»] chr2 (17 HSPs)
chr2 (91-565)||(22497189-22497655)
chr2 (375-673)||(20915799-20916105)
chr2 (289-622)||(34858362-34858701)
chr2 (289-622)||(34873424-34873763)
chr2 (289-675)||(27472945-27473338)
chr2 (80-265)||(29718075-29718262)
chr2 (487-608)||(22497663-22497783)
chr2 (290-404)||(18985404-18985517)
chr2 (169-248)||(24788461-24788540)
chr2 (289-350)||(26861388-26861449)
chr2 (293-353)||(13361844-13361904)
chr2 (169-255)||(21554099-21554185)
chr2 (293-353)||(10039215-10039275)
chr2 (217-265)||(20916211-20916259)
chr2 (289-385)||(23908509-23908603)
chr2 (217-265)||(34858292-34858340)
chr2 (217-265)||(34873354-34873402)
[»] scaffold0207 (2 HSPs)
scaffold0207 (170-603)||(808-1241)
scaffold0207 (500-607)||(1329-1436)
[»] scaffold0364 (3 HSPs)
scaffold0364 (312-617)||(14168-14472)
scaffold0364 (515-608)||(13986-14079)
scaffold0364 (199-264)||(14523-14588)
[»] chr1 (7 HSPs)
chr1 (111-353)||(17451265-17451509)
chr1 (289-420)||(15544090-15544220)
chr1 (289-404)||(21496366-21496480)
chr1 (210-266)||(21496509-21496565)
chr1 (456-551)||(17451123-17451218)
chr1 (147-192)||(15544303-15544348)
chr1 (217-265)||(21995764-21995812)
[»] scaffold0381 (2 HSPs)
scaffold0381 (108-457)||(11516-11858)
scaffold0381 (459-679)||(11900-12111)
[»] scaffold0153 (2 HSPs)
scaffold0153 (289-675)||(11809-12202)
scaffold0153 (289-675)||(4789-5182)
[»] scaffold0686 (1 HSPs)
scaffold0686 (217-616)||(988-1391)
[»] scaffold0290 (1 HSPs)
scaffold0290 (162-385)||(11899-12118)
[»] chr7 (16 HSPs)
chr7 (375-604)||(46579976-46580212)
chr7 (289-404)||(11800151-11800265)
chr7 (289-622)||(11091190-11091529)
chr7 (508-675)||(11310001-11310169)
chr7 (474-675)||(48812530-48812732)
chr7 (293-356)||(9693168-9693231)
chr7 (108-266)||(16068064-16068226)
chr7 (169-255)||(23089191-23089277)
chr7 (534-617)||(16379627-16379710)
chr7 (109-149)||(9692996-9693036)
chr7 (217-265)||(11085424-11085472)
chr7 (217-265)||(11091550-11091598)
chr7 (499-551)||(12346615-12346667)
chr7 (293-353)||(15214390-15214450)
chr7 (293-353)||(38828972-38829032)
chr7 (217-265)||(46579859-46579907)
[»] scaffold0032 (1 HSPs)
scaffold0032 (289-622)||(67840-68179)
[»] chr6 (12 HSPs)
chr6 (290-675)||(27851695-27852087)
chr6 (289-404)||(19545316-19545430)
chr6 (289-604)||(20733414-20733735)
chr6 (513-607)||(19545722-19545816)
chr6 (289-385)||(22395628-22395723)
chr6 (293-353)||(1254669-1254729)
chr6 (293-400)||(14746370-14746476)
chr6 (172-255)||(14971466-14971549)
chr6 (108-149)||(22395465-22395506)
chr6 (293-353)||(7680768-7680828)
chr6 (217-265)||(20733344-20733392)
chr6 (94-150)||(26587842-26587898)
[»] chr3 (23 HSPs)
chr3 (290-402)||(27868450-27868561)
chr3 (289-675)||(52989028-52989421)
chr3 (293-356)||(10302601-10302664)
chr3 (289-404)||(22161555-22161669)
chr3 (289-385)||(21999379-21999474)
chr3 (474-550)||(3264275-3264351)
chr3 (508-675)||(3264502-3264670)
chr3 (293-385)||(21976948-21977039)
chr3 (526-675)||(36528208-36528358)
chr3 (293-385)||(19186626-19186717)
chr3 (293-356)||(10340927-10340990)
chr3 (375-544)||(14966801-14966977)
chr3 (298-403)||(16358007-16358111)
chr3 (375-550)||(36528527-36528707)
chr3 (91-149)||(16357810-16357867)
chr3 (108-149)||(10302785-10302826)
chr3 (293-353)||(11913633-11913693)
chr3 (293-353)||(14647184-14647244)
chr3 (217-265)||(14967088-14967136)
chr3 (109-149)||(19186848-19186888)
chr3 (293-353)||(50755483-50755543)
chr3 (293-353)||(51602679-51602739)
chr3 (217-265)||(52988958-52989006)
[»] scaffold0385 (1 HSPs)
scaffold0385 (91-380)||(15980-16269)
[»] scaffold0174 (2 HSPs)
scaffold0174 (289-675)||(13126-13519)
scaffold0174 (217-265)||(13541-13589)
[»] scaffold0395 (2 HSPs)
scaffold0395 (390-675)||(11389-11682)
scaffold0395 (217-265)||(11793-11841)
[»] scaffold0118 (1 HSPs)
scaffold0118 (289-404)||(11779-11893)
[»] scaffold0094 (2 HSPs)
scaffold0094 (289-404)||(2671-2785)
scaffold0094 (513-607)||(3078-3172)
[»] chr8 (15 HSPs)
chr8 (375-675)||(19807649-19807957)
chr8 (293-622)||(21321322-21321656)
chr8 (375-617)||(22237305-22237554)
chr8 (210-340)||(15727628-15727756)
chr8 (477-622)||(21326109-21326254)
chr8 (162-352)||(1683092-1683279)
chr8 (169-255)||(17883149-17883235)
chr8 (289-349)||(19862149-19862209)
chr8 (289-349)||(19866786-19866846)
chr8 (375-454)||(21326000-21326080)
chr8 (293-353)||(26859384-26859444)
chr8 (302-349)||(10454273-10454320)
chr8 (293-353)||(364701-364761)
chr8 (222-262)||(17861454-17861494)
chr8 (217-265)||(22237150-22237198)
[»] scaffold1405 (1 HSPs)
scaffold1405 (500-622)||(1305-1427)
[»] scaffold0010 (1 HSPs)
scaffold0010 (177-266)||(143048-143137)
[»] scaffold0074 (1 HSPs)
scaffold0074 (289-604)||(1499-1820)
[»] scaffold0170 (1 HSPs)
scaffold0170 (210-266)||(18097-18154)
[»] scaffold0481 (1 HSPs)
scaffold0481 (310-349)||(11436-11475)
[»] scaffold0408 (1 HSPs)
scaffold0408 (293-400)||(14806-14912)
[»] scaffold0635 (1 HSPs)
scaffold0635 (293-353)||(7795-7855)
[»] scaffold0599 (1 HSPs)
scaffold0599 (293-353)||(909-969)
[»] scaffold0577 (1 HSPs)
scaffold0577 (293-353)||(8867-8927)
[»] scaffold0077 (1 HSPs)
scaffold0077 (293-353)||(17358-17418)
[»] scaffold0001 (1 HSPs)
scaffold0001 (289-349)||(139273-139333)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 108 - 675
Target Start/End: Original strand, 20872222 - 20872789
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggggttgtttacttcttaatatgatgttgttgttattatgtgagattgtgaggagagattt 207  Q
    ||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20872222 gggagaatctttgcacttttgggtatcttaatatatgacatggtt-tttacttcttaatatgatgttgttgttattatgtgagattgtgatgagagattt 20872320  T
Q  208 acgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnngacttaaaaagagtggataat 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||    
T  20872321 acgatgaacgaattaaaagatgaagttgaaatatcataattgaggaaaactagtttagtactttgaattgagtttttttgacttaaaaagagtggataat 20872420  T
Q  308 ctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaaacggagtcga 407  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20872421 ctggtaggttaacgaagaattagtgtttgaatgatagggtaatcatggaagtgaatattagggtcgagtttggagagtacatgatcgaaaacggagtcga 20872520  T
Q  408 aaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttcttactctctcagtttgacaagtttaagttctgaattgggt 507  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20872521 aaagggttccccaaagcgaaatcgcagcacaactgcaattttgctgtcaccgtgcgtttcttactctcttagtttgacaagtttaagttctgaattgggt 20872620  T
Q  508 ttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaata 607  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20872621 ttaggtgtcttcatgaacattgtagatatggatgttaggtttcactagcctttggaggaacttgatttaagcatctagatctcaatatatgatcaaaata 20872720  T
Q  608 ccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20872721 ccacaaagggttcagcagggatcaacaaggtcgtgctttttccctaagcttaggaaaatcatcttttct 20872789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 108 - 457
Target Start/End: Complemental strand, 9887028 - 9886686
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggggttgtttacttcttaatatgatgttgttgttattatgtgagattgtgaggagagattt 207  Q
    ||||||||||||||||||| | |||||||||||||||| |||| |||||| |||||||      |||| |||||| |||||||||||||| |||||||||    
T  9887028 gggagaatctttgcactttagggtatcttaatatatgacgggggtgtttatttcttaa------gttgatgttatgatgtgagattgtgatgagagattt 9886935  T
Q  208 acgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnn-gacttaaaaagagtggataa 306  Q
    | ||| |||||||||||||||| || ||||| || |||||||| |||||||||||||    |||||||| ||        | ||||||| ||||||||||    
T  9886934 atgataaacgaattaaaagatgcagatgaaagatgagaattgaagaaaactagtttatgtttttgaattgagtttttttagccttaaaatgagtggataa 9886835  T
Q  307 tctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaaacggagtcg 406  Q
    || |||| |||||| |||||||| ||||| || |||| | |||||||| | ||||| |||| ||  ||||||||||| || | |||||||||||| |||     
T  9886834 tccggtaagttaacaaagaattagtgtttcaacgataagataatcatg-aggtgaagattacggccgagtttggagaatataggatcgaaaacggtgtca 9886736  T
Q  407 aaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcac 457  Q
    |||||||||| |||| |||||||||  | | ||||| ||||||||||||||    
T  9886735 aaaagggttctccaaggcgaaatcg-tgtagaactgtgattttgctgtcac 9886686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 459 - 679
Target Start/End: Complemental strand, 9886644 - 9886433
Alignment:
Q  459 gtgcgtttcttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcct 558  Q
    |||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||| |||||  |||||| |||||||||||| ||||||||||||    
T  9886644 gtgcgtttcttaccgtctcagtttggcaagtttaagttatgaattgggtttaggtgtctttataaaatttgtagatatggatgttagttttcactagcct 9886545  T
Q  559 ttggagggacttgatttaagcatctagatctcaatatatgatcaaaataccacaaagggttcagaaggatcaacaaggtcgtgctttttccctaagctta 658  Q
    || || |||||  ||||||  |||||||  |||| |||||||||||||||         | || |||| |||||||||| |||||||||||| || ||||    
T  9886544 ttagatggactcaatttaaaaatctagaaatcaagatatgatcaaaatac---------tacacaagggtcaacaaggttgtgctttttccccaaactta 9886454  T
Q  659 ggaaaatcaacttttctacca 679  Q
    |||||||||||||||||||||    
T  9886453 ggaaaatcaacttttctacca 9886433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 108 - 404
Target Start/End: Complemental strand, 13268126 - 13267830
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggggttgtttacttc----ttaatatgatgttgttgttattatgtgagattgtgaggagag 203  Q
    ||||||||||||||||||| | |||||||||| |||||||||   |||| |||     ||||||   |||||||||||| |||||| ||| ||| |||||    
T  13268126 gggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtga-attttgacgagag 13268028  T
Q  204 atttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnngacttaaaaagagtgga 303  Q
    | | | |||||||||||| |||||||||||||||| || | ||||||| |||||||||||||   |||||||| ||       | |||||||| ||||||    
T  13268027 aatgatgatgaacgaattgaaagatgaagttgaaagatgacaattgagtaaaactagtttagatttttgaattgagtttta--gtcttaaaaaaagtgga 13267930  T
Q  304 taatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaaacggag 403  Q
    ||||| |||||||||||||||||||| | |||||||||||||||| |||||| |||||| |||||||| |||||||| ||||  | | ||||||||||||    
T  13267929 taatcaggtaggttaacgaagaattagtttttgaatgatagggtagtcatgg-agtgaagattagggtcgagtttggtgagtttagggtcgaaaacggag 13267831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 289 - 462
Target Start/End: Complemental strand, 22201356 - 22201184
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||  ||||| |||||||  ||||||||||||| |    
T  22201356 cttaaaaagagttgataatctggtaggttaacgaagaattagtgtttaaatgatagggtagtcat-gagatgaattttagggtcaagtttggagagtata 22201258  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgc 462  Q
    | |||||||||||||||||||||||| ||| || || ||||| ||||| ||| ||||||||| |||||| ||||    
T  22201257 taatcgaaaacggagtcgaaaagggtcccctaaggcaaaatcacagcaaaaccgcgattttgttgtcactgtgc 22201184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 289 - 675
Target Start/End: Complemental strand, 10057557 - 10057164
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| |||||  |||  ||||||||||| ||||| |  || |  |||| ||||  ||||||||||||      
T  10057557 cttaaaaagagtggataatacagtaggttgatgaataattagagttataatgatagggtgatcatagg-gtaatgattatggttatgtttggagagtatc 10057459  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
     ||||||||||||||||||||||  |||||||||| |||||||||| |  |||||||||||||||||||  ||||       |||| ||| | |||||||    
T  10057458 ggatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcaactgaactgcgattttgctgtcagtgtgcaaaacgcgttt-ttattgtctcagt 10057360  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||| ||  ||| |||||||||||| ||| |  || ||||||| |||||||||||  | ||||| | |||| |||| ||| ||||||||||    
T  10057359 ttgacaagtttaaatttcgaactgggtttaggtgccttaacgaaagttgtagatatggatgttatctgtcactcggcttttgaggcactcgatttaagca 10057260  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
      |||| ||||| ||||||||||| ||| ||| |||| |||| | |||||| ||  ||||| || ||| ||  ||| |||||||||||||||||||    
T  10057259 catagaactcaagatatgatcaaattactacacaggggtcagcagggatcagcacagtcgtcctcttttcccgagcataggaaaatcaacttttct 10057164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 14185892 - 14185700
Alignment:
Q  364 attagggttgagtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgc- 462  Q
    ||||||||  |||||||| ||||   ||||||||||| ||||||||||  |||||||| |||||||||||||  |||||||||||||||||||  ||||     
T  14185892 attagggtcaagtttggaaagtattggatcgaaaacgaagtcgaaaagatttccccaaggcgaaatcgcagctgaactgcgattttgctgtcagtgtgca 14185793  T
Q  463 ------gtttcttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttc 550  Q
          |||| ||| | ||||||||||||||||||||| |||||| |||||||||| |||||||  || ||||||| |||||||||||| ||||    
T  14185792 aaacgcgttt-ttattgtctcagtttgacaagtttaaggtctgaactgggtttaggagtcttcacgaaagttgtaggtatggatgttagctttc 14185700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 18554892 - 18555006
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||| |||||||| | |||||| ||||  |    
T  18554892 cttaaaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgatagggtgatgatgg-agtgaagattagggtcgggtttggcgagttta 18554990  T
Q  389 tgatcgaaaacggagt 404  Q
     | |||||||||||||    
T  18554991 gggtcgaaaacggagt 18555006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 12230747 - 12230684
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatgga 356  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12230747 aaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgatagggtaatcatgga 12230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 298 - 403
Target Start/End: Original strand, 15888710 - 15888814
Alignment:
Q  298 agtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaa 397  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||| |||||| |||||||| |||||||| ||||  | | ||||||    
T  15888710 agtggataatcaggtaggttaacgaagaattagtgtttcaatgatagggtagtcatgg-agtgaagattagggtcgagtttggcgagtttagggtcgaaa 15888808  T
Q  398 acggag 403  Q
    ||||||    
T  15888809 acggag 15888814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 15871135 - 15871239
Alignment:
Q  298 agtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaa 397  Q
    ||||||||||| ||||||||||| |||||||| ||||| |||||||||||| |||||| |||||| |||||||| |||||||| ||||  | | ||||||    
T  15871135 agtggataatcaggtaggttaac-aagaattagtgtttcaatgatagggtagtcatgg-agtgaagattagggtcgagtttggcgagtttagggtcgaaa 15871232  T
Q  398 acggagt 404  Q
    |||||||    
T  15871233 acggagt 15871239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 19727540 - 19727701
Alignment:
Q  109 ggagaatctttgcacttttgagtatcttaatatatgatggg---gttgt-ttacttcttaatatgatgttgttgttattatgtgagattgtgaggagaga 204  Q
    |||||||||||||||||| | |||||||||| ||||| |||   ||||| |||  | |||| ||| ||||  |||||| |||||| ||| ||| ||||||    
T  19727540 ggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtga-attttgacgagaga 19727638  T
Q  205 tttacgatgaacgaatt-aaaagatgaagttgaaatatcagaattgaggaaaactagtttagt 266  Q
     | | ||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  19727639 atgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagt 19727701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 13559545 - 13559608
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatgga 356  Q
    ||||||||||||||||||||||||||| ||| ||||  | ||||||||||||||||||||||||    
T  13559545 aaaagagtggataatctggtaggttaatgaataattggtatttgaatgatagggtaatcatgga 13559608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 369
Target Start/End: Complemental strand, 13235225 - 13235092
Alignment:
Q  233 ttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnngacttaaaaagagtggataatctggtaggttaacgaagaattaatg 332  Q
    ||||||||| ||||||||||||||| |||||||   |||||||| ||       | ||||||||||||||||| |  |||||||||||||| ||||| ||    
T  13235225 ttgaaatatgagaattgaggaaaaccagtttaggtttttgaattgagtttta--gtcttaaaaagagtggatatttcggtaggttaacgaataattagtg 13235128  T
Q  333 tttgaatgatagggtaatcatggaagtgaatattagg 369  Q
    | |||||||||||||| |||||| |||||| ||||||    
T  13235127 tatgaatgatagggtagtcatgg-agtgaagattagg 13235092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 607
Target Start/End: Original strand, 18555298 - 18555392
Alignment:
Q  513 tgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaata 607  Q
    ||||||||| || || |||| ||| |||||||| |||||||||||||||||||||||  ||||||| ||||| | ||||| ||||||| ||||||    
T  18555298 tgtcttcatgaaagtggtagatatcgatgttagctttcactagcctttggagggactctatttaagtatctataactcaagatatgatgaaaata 18555392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 17419483 - 17419426
Alignment:
Q  210 gatgaacgaatt-aaaagatgaagttgaaatatcagaattgaggaaaactagtttagt 266  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  17419483 gatgaacgaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagt 17419426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 16588528 - 16588442
Alignment:
Q  169 gatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaa 255  Q
    |||||||||| ||| ||||||||||||||  ||| ||| | ||  ||||||||||||||||||||||||  || ||||| |||||||    
T  16588528 gatgttgttgctatgatgtgagattgtgattagacattgatgacaaacgaattaaaagatgaagttgaaggatgagaatagaggaaa 16588442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 13559373 - 13559413
Alignment:
Q  109 ggagaatctttgcacttttgagtatcttaatatatgatggg 149  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  13559373 ggagaatctttgcactttagagtatcttaatctatgatggg 13559413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 19727758 - 19727817
Alignment:
Q  327 ttaatgtttgaatgatagggtaatcatgga-agtgaatattagggttgagtttggagagt 385  Q
    ||| ||||||||||||||| |||||||||| |||||| |||||||| |||||||| ||||    
T  19727758 ttagtgtttgaatgataggttaatcatggagagtgaagattagggtcgagtttggcgagt 19727817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 15870953 - 15870994
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggg 149  Q
    ||||||||||||||||||| | |||||||||| |||||||||    
T  15870953 gggagaatctttgcactttagggtatcttaatttatgatggg 15870994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 551
Target Start/End: Original strand, 18321772 - 18321829
Alignment:
Q  494 gttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttca 551  Q
    |||| ||||||| ||||||||||||||| ||  |||||| |||||||||||| |||||    
T  18321772 gttccgaattggatttaggtgtcttcatgaaaattgtagatatggatgttagctttca 18321829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 18453174 - 18453117
Alignment:
Q  494 gttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttca 551  Q
    |||| ||||||| ||||||||||||||| ||  |||||| |||||||||||| |||||    
T  18453174 gttccgaattggatttaggtgtcttcatgaaaattgtagatatggatgttagctttca 18453117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 24046634 - 24046694
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  24046634 aaaagagtggttaatcaggtaggttagagatggattaacgttttaatgatagggtaatcat 24046694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 30275169 - 30275257
Alignment:
Q  95 attcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatgggg-ttgtttacttcttaatatgatgttgttgttat 182  Q
    ||||||||| |  ||||||||| || |||||| | ||| |||| | ||||| |||| ||||||| ||||||| ||||||||||||||||    
T  30275169 attcgaggtaagtgggagaatcatttcactttagggtaacttattctatgacgggggttgtttaattcttaagatgatgttgttgttat 30275257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 73 - 679
Target Start/End: Complemental strand, 24565049 - 24564448
Alignment:
Q  73 ccaaacaccgcgtttttggagaattcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatggggttgtttacttcttaatatgatg 172  Q
    ||||||||||||||||||||||||||||||| || || | |||||||||||||| | || ||||||||||||| |||||  |||| ||||||||||||||    
T  24565049 ccaaacaccgcgtttttggagaattcgaggtaatgggaaaaatctttgcactttagggtctcttaatatatgacggggtcttttaattcttaatatgatg 24564950  T
Q  173 ttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttg 272  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||| |||||||||||||||||| || ||||||||||||||||| ||||    ||||    
T  24564949 ttgttgttaatatgtgagattttgatgagagatttatgatgaacgaaataaaagatgaagttgaaaaatgagaattgaggaaaactaatttatgtttttg 24564850  T
Q  273 aattaag--nnnnnnngacttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattaggg 370  Q
    ||| |||         ||||||| | ||||  |||||||||||||||||| || | ||||||||||||||||||||||||||||| | | || |||||||    
T  24564849 aatcaagtttttttaagacttaagatgagtatataatctggtaggttaacaaatagttaatgtttgaatgatagggtaatcatggga-taaagattaggg 24564751  T
Q  371 ttgagtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttctta 470  Q
      || ||| ||||||| |||||||||||||||||| |||||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||| |||    
T  24564750 ccgattttagagagtatatgatcgaaaacggagtcaaaaagggttccccaaagttaaatcgcagaagaactgcgattttgctgtcaccgtgcgtttatta 24564651  T
Q  471 ctctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggactt 570  Q
     | |     |||| ||| ||||||||||||| ||| ||||||||| |||| ||| ||||||| ||||||||||| ||||||| | |||||| |||||||     
T  24564650 atgt-----tttggcaactttaagttctgaaatggatttaggtgtattcacaaaagttgtagatatggatgtta-gtttcaccaacctttgaagggactc 24564557  T
Q  571 gatttaagcatctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaac 669  Q
    ||||||||||||||||  |||||||||||||||||||| ||| |||| ||||   |||||| |||||| ||||||||||||| ||| |||||||||||||    
T  24564556 gatttaagcatctagaattcaatatatgatcaaaatactacacagggatcagctgggatcagcaaggttgtgctttttccct-agcctaggaaaatcaac 24564458  T
Q  670 ttttctacca 679  Q
    ||||||||||    
T  24564457 ttttctacca 24564448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 73 - 679
Target Start/End: Complemental strand, 24606084 - 24605483
Alignment:
Q  73 ccaaacaccgcgtttttggagaattcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatggggttgtttacttcttaatatgatg 172  Q
    |||||||||||||||| |||||||||||||| || |||| |||||||||||||| | || ||||||||||||| |||||  |||| ||||||||||||||    
T  24606084 ccaaacaccgcgtttt-ggagaattcgaggtaat-gggaaaatctttgcactttagggtctcttaatatatgacggggtcttttaattcttaatatgatg 24605987  T
Q  173 ttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagt-acttt 271  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||| |||||||||||||||||| || ||||||||||||||||| |||| |   |||    
T  24605986 ttgttgttaatatgtgagattttgatgagagatttatgatgaacgaaataaaagatgaagttgaaaaatgagaattgaggaaaactaatttattgttttt 24605887  T
Q  272 gaat-taag--nnnnnnngacttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattag 368  Q
    |||| ||||         ||||||| | ||||  |||||||||||||||||| || | ||||||||||||||||||||||||||||| | | || |||||    
T  24605886 gaatctaagtttttttaagacttaagatgagtatataatctggtaggttaacaaatagttaatgtttgaatgatagggtaatcatggga-taaagattag 24605788  T
Q  369 ggttgagtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttct 468  Q
    ||  || ||| ||||||| |||||||||||||||||| |||||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||| |    
T  24605787 ggccgattttagagagtatatgatcgaaaacggagtcaaaaagggttccccaaagttaaatcgcagaagaactgcgattttgctgtcaccgtgcgtttat 24605688  T
Q  469 tactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggac 568  Q
    || | |     |||| ||| ||||||||||||| ||| ||||||||| |||| ||| ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  24605687 taatgt-----tttggcaactttaagttctgaaatggatttaggtgtattcacaaaagttgtagatatggatgtta-gtttcaccaacctttgaagggac 24605594  T
Q  569 ttgatttaagcatctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatca 667  Q
    | ||||||||||||||||  |||||||||||||||||||| ||| |||| ||||   |||||| |||||| ||||||||||||| ||| |||||||||||    
T  24605593 tcgatttaagcatctagaattcaatatatgatcaaaatactacacagggatcagctgggatcagcaaggttgtgctttttccct-agcctaggaaaatca 24605495  T
Q  668 acttttctacca 679  Q
    ||||||||||||    
T  24605494 acttttctacca 24605483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 679
Target Start/End: Complemental strand, 13939079 - 13938505
Alignment:
Q  96 ttcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatggg-gttgtttacttcttaatatgatgttgttgttattatgtgagattg 194  Q
    |||||||| | ||| |||||||||||||||| | |||||||||||||||||||  | |||||| ||||||| ||| |||||||||||| ||||||||||     
T  13939079 ttcgaggtaagaggaagaatctttgcactttagtgtatcttaatatatgatggacggtgtttaattcttaagatgttgttgttgttatgatgtgagattt 13938980  T
Q  195 tgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnngacttaaa 294  Q
    ||| |||||||||| |||||||||||| |||||| ||||||||| || |||||||||||||||||||||||   |||||||| ||         ||||||    
T  13938979 tgatgagagatttatgatgaacgaattgaaagataaagttgaaagatgagaattgaggaaaactagtttaggtatttgaattgagttttttatccttaaa 13938880  T
Q  295 aagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcg 394  Q
    |||| ||||||||| ||||||||||| |||||||| ||||||||| |||| ||| |||||   ||||| |||| ||| ||||||| |||||| | |||      
T  13938879 aagaatggataatccggtaggttaacaaagaattagtgtttgaattatagagtagtcatgcg-gtgaagattatggtcgagtttgcagagtaaaagataa 13938781  T
Q  395 aaaac-ggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttcttactctctcagtttgacaagtttaa 493  Q
    ||||  |||||| |||||||||||||||||||||||||||||| |||| |||||||| |||| | ||| |||||||||| ||||  |||| |||||||||    
T  13938780 aaaaatggagtctaaaagggttccccaaagcgaaatcgcagcagaactacgattttgttgtcgctgtgtgtttcttactgtctcgatttggcaagtttaa 13938681  T
Q  494 gttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaat 593  Q
    ||| || |||||||||| |||||||||| || ||||||| |||| ||||||| |||||||||| |||| ||||| | |||||||||||  ||| | |||     
T  13938680 gttatg-attgggtttatgtgtcttcatgaaagttgtagatatgaatgttagatttcactagcatttgtagggattggatttaagcattcagaacgcaag 13938582  T
Q  594 atatgatcaaaataccacaaagggttcagaaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttctacca 679  Q
    ||||||||||||||| ||| | || ||||         |||||||||||| |||||| |||||||||||||||||| |||||||||    
T  13938581 atatgatcaaaatactacacatgggtcag---------caaggtcgtgctctttccccaagcttaggaaaatcaacatttctacca 13938505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 170 - 607
Target Start/End: Original strand, 25581400 - 25581836
Alignment:
Q  170 atgttgttgttattatg-tgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtac 268  Q
    ||||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||| |||||        
T  25581400 atgttgttgttgttatgatgagactgtgatgagagatttatgatgaacgaattaaaagatgaagttgaaagatgagaattgagtaaaacttgtttaactt 25581499  T
Q  269 tttgaattaagnnnnnnngacttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattag 368  Q
    |||||||| ||         | ||||||||||||||||||  |||||||||| |||||||| ||||  | |||||| ||||||||||  ||||| |||||    
T  25581500 tttgaattgagttttttaaccataaaaagagtggataatccagtaggttaacaaagaattagtgttcaattgatagtgtaatcatggg-gtgaagattag 25581598  T
Q  369 ggttgagtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttct 468  Q
    ||| |||||||||||||| | |||| |||||||||||||||||||||||| || | |||| ||||||| ||||| ||||||||| ||||||||| |||||    
T  25581599 ggtcgagtttggagagtatacgatcaaaaacggagtcgaaaagggttcccgaa-gtgaaaacgcagcataactgtgattttgctatcaccgtgcatttct 25581697  T
Q  469 tactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggac 568  Q
    |||| |||||||||||||||||||||||| ||| |||||||| ||||| |||| || ||||||  |||||||||||  ||||||| |||||||||  |||    
T  25581698 tactgtctcagtttgacaagtttaagttccgaaatgggtttaagtgtcatcatgaaagttgtatatatggatgttatctttcactcgcctttggattgac 25581797  T
Q  569 ttgatttaagcatctagatctcaatatatgatcaaaata 607  Q
    | ||||||||| |||||| ||| | ||||||||||||||    
T  25581798 tcgatttaagcgtctagaactctagatatgatcaaaata 25581836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 294 - 608
Target Start/End: Complemental strand, 32948721 - 32948408
Alignment:
Q  294 aaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatc 393  Q
    |||||||||||||||   |||||| || |||||||| |||||||||||||| ||||||||||  ||||| |||||||| || ||||||||||| ||||||    
T  32948721 aaagagtggataatccattaggttgacaaagaattagtgtttgaatgatagtgtaatcatggg-gtgaagattagggtcgaatttggagagtatatgatc 32948623  T
Q  394 gaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttcttactctctcagtttgacaagtttaa 493  Q
     |||||  ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| |||||||||| ||||  ||||||||||||||    
T  32948622 aaaaacaaagtagaaaagggttccccaaagtgaaatcgcagcagaactgcgattttgctgtcactgtgtgtttcttactgtctctatttgacaagtttaa 32948523  T
Q  494 gttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaat 593  Q
    |||| ||| || |||||| ||||||||| || | ||||  |||||||||||  ||||||||  |||||||| ||||| |||||||| |||||| ||| |     
T  32948522 gttccgaactgagtttagatgtcttcatgaaagatgtatatatggatgttatctttcactatactttggagtgactttatttaagcgtctagaactctag 32948423  T
Q  594 atatgatcaaaatac 608  Q
    |||||||||||||||    
T  32948422 atatgatcaaaatac 32948408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 500 - 622
Target Start/End: Original strand, 25581920 - 25582042
Alignment:
Q  500 aattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatga 599  Q
    |||| ||||| | ||||||||| || ||||||| |||||||||||  |||||||||||||||||||||||  ||||||| ||||||| ||||| ||||||    
T  25581920 aattaggttttgatgtcttcatgaaagttgtagatatggatgttacatttcactagcctttggagggactctatttaagtatctagaactcaagatatga 25582019  T
Q  600 tcaaaataccacaaagggttcag 622  Q
    | ||||||| ||| |||| ||||    
T  25582020 tgaaaatactacataggggtcag 25582042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 108 - 265
Target Start/End: Complemental strand, 32948918 - 32948760
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggg---gttgt--ttacttcttaatatgatgttgttgttattatgtgagattgtgaggaga 202  Q
    ||||||||||||||||||| |||||||| ||| | |||||||   |||||  ||| || |||||||| ||||| |||||| |||  ||||||||| | ||    
T  32948918 gggagaatctttgcactttagagtatctaaatct-tgatgggagggttgtctttaatt-ttaatatgttgttgctgttatgatg--agattgtgatgtga 32948823  T
Q  203 gatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    |||||| |||||||| |||||||||||||||||||| || ||||| |||||||||| ||||||    
T  32948822 gatttatgatgaacggattaaaagatgaagttgaaagataagaatcgaggaaaacttgtttag 32948760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 355
Target Start/End: Complemental strand, 14138001 - 14137809
Alignment:
Q  160 tcttaatatgatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaacta 259  Q
    |||||||||| ||||||||||||  ||||| ||| ||| ||  || | | ||||||| ||||||||||| ||||||||| || ||||||||||||| |||    
T  14138001 tcttaatatgttgttgttgttatgctgtga-attttgatgaaggaataatgatgaacaaattaaaagataaagttgaaagatgagaattgaggaaa-cta 14137904  T
Q  260 gtttagtactttgaattaagnnnnnnngacttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatgg 355  Q
    ||||||   ||| || | ||       | | |||||||||| |||||| ||||||||||| ||||||||| |||||| |||||| | |||||||||    
T  14137903 gtttaggtttttaaaatgagttttta-gccgtaaaaagagtagataatttggtaggttaatgaagaattactgtttggatgatatgataatcatgg 14137809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 23909101 - 23909038
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatgga 356  Q
    |||| ||||||||||  ||||||||||| |||||||  |||||| |||||||||||||||||||    
T  23909101 aaaaaagtggataattcggtaggttaacaaagaatttgtgtttgcatgatagggtaatcatgga 23909038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 25791750 - 25791666
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttga 374  Q
    ||||||||||||| ||||||  ||||||||||  |  |||| ||||||||||||||| ||||||  | |||||| |||||||||||    
T  25791750 cttaaaaagagtgaataatccagtaggttaacctatgattagtgtttgaatgataggttaatcacag-agtgaagattagggttga 25791666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 25791830 - 25791773
Alignment:
Q  210 gatgaacgaatt-aaaagatgaagttgaaatatcagaattgaggaaaactagtttagt 266  Q
    |||||||||||| ||||  ||||||||||| || ||||||||| ||||||||||||||    
T  25791830 gatgaacgaattgaaaatgtgaagttgaaagatgagaattgagaaaaactagtttagt 25791773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 24830079 - 24830139
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | |||||||||  |||||||||||||||||    
T  24830079 aaaagagtggttaatcaggtaggttagtgagggattaatgttctaatgatagggtaatcat 24830139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 36460942 - 36460882
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  36460942 aaaagagtggttaatcgggtaggttagtgatggattaacgtttcaatgatagggtaatcat 36460882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 4e-80; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 91 - 565
Target Start/End: Original strand, 22497189 - 22497655
Alignment:
Q  91 gagaattcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatggggttgtttacttcttaatatgatgttgttgttattatgtgag 190  Q
    ||||||||||| | |  ||||||||||||||||||  | |||||||| ||||||| |||  |||||| ||||||| |||||||||||   || |||||||    
T  22497189 gagaattcgagctaagggggagaatctttgcacttagg-gtatcttattatatgacgggtgtgtttatttcttaagatgatgttgtt---ataatgtgag 22497284  T
Q  191 attgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnn-gac 289  Q
    ||||||| || ||||||| ||||||||||||||||||||||||||||| |   ||||||||||||| || |||||   |||||||| ||        | |    
T  22497285 attgtgatgaaagatttatgatgaacgaattaaaagatgaagttgaaaga---gaattgaggaaaattaatttaggtttttgaattgagtttttttagcc 22497381  T
Q  290 ttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacat 389  Q
    |||||| ||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| ||  ||||| |||||||| || ||||||||||| |     
T  22497382 ttaaaaggagtggataatatggtaggttgacgaagaattagtgtttgaataatagggtaatcacggg-gtgaagattagggtcgattttggagagtatag 22497480  T
Q  390 gatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttcttactctctcagttt-gacaag 488  Q
    |||| ||||| ||||| ||||||||||| ||| || ||||||||||  |||| | |||||||||||||||||||||| ||| | |||| |||| ||| ||    
T  22497481 gatcaaaaacagagtcaaaaagggttcctcaaggcaaaatcgcagctgaactacaattttgctgtcaccgtgcgttttttattgtctcggtttcgac-ag 22497579  T
Q  489 tttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagg 565  Q
    |||||||||| ||||||| ||| |||||||||| || ||||||| ||||| |||||| |||||||||||||||||||    
T  22497580 tttaagttctaaattggg-ttacgtgtcttcatgaaagttgtagatatggttgttagctttcactagcctttggagg 22497655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 375 - 673
Target Start/End: Complemental strand, 20916105 - 20915799
Alignment:
Q  375 gtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgcgt------ttc 467  Q
    ||||||||||||   ||||||||||||| ||||||||  |||||||||| ||||||||||||  |||||||||||||||||||  ||||        ||     
T  20916105 gtttggagagtattggatcgaaaacggattcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctgtcagtgtgcaaaacgcattt 20916006  T
Q  468 ttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggaggga 567  Q
    ||| | |||||||||||||||||||||||  ||| |||||||||||| ||||| ||| ||||||| ||||||||||| || ||||| | ||||| ||| |    
T  20916005 ttattgtctcagtttgacaagtttaagtttcgaactgggtttaggtgccttcacaaaagttgtagatatggatgttatgtgtcactcggctttgcaggca 20915906  T
Q  568 cttgatttaagcatctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatc 666  Q
    || ||||||||||  |||| ||||| ||||||||||| ||| ||| |||| |||| | |||||| ||  ||||| || ||| ||  ||| ||||||||||    
T  20915905 ctcgatttaagcacatagaactcaagatatgatcaaattactacataggggtcagcagggatcagcacagtcgtcctcttttcccgagcataggaaaatc 20915806  T
Q  667 aactttt 673  Q
    |||||||    
T  20915805 aactttt 20915799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 622
Target Start/End: Original strand, 34858362 - 34858701
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||      
T  34858362 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcatagg-gtaatgattagggtcatgtttggagagtatt 34858460  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
      |||||||||||||||||||||  |||||||||| ||||||||||||  ||||||||||||||| ||   ||||       |||| ||| | |||||||    
T  34858461 gtatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctttcggtgtgcaaaacacgttt-ttattgtctcagt 34858559  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||| ||||||  |||||||||||  | ||||| | |||| |||| ||| ||||||||||    
T  34858560 ttgacaagtttaagtttcgaactgggtttaggtgccttcataaaagttgtacatatggatgttatctgtcactcggcttttgaggcactcgatttaagca 34858659  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag 622  Q
      |||| ||||| ||||||||||| ||| ||| |||| ||||    
T  34858660 catagaactcaagatatgatcaaattactacacaggggtcag 34858701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 622
Target Start/End: Original strand, 34873424 - 34873763
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||      
T  34873424 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcatagg-gtaatgattagggtcatgtttggagagtatt 34873522  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
      |||||||||||||||||||||  |||||||||| ||||||||||||  ||||||||||||||| ||   ||||       |||| ||| | |||||||    
T  34873523 gtatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctttcggtgtgcaaaacacgttt-ttattgtctcagt 34873621  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||| ||||||  |||||||||||  | ||||| | |||| |||| ||| ||||||||||    
T  34873622 ttgacaagtttaagtttcgaactgggtttaggtgccttcataaaagttgtacatatggatgttatctgtcactcggcttttgaggcactcgatttaagca 34873721  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag 622  Q
      |||| ||||| ||||||||||| ||| ||| |||| ||||    
T  34873722 catagaactcaagatatgatcaaattactacacaggggtcag 34873763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 289 - 675
Target Start/End: Complemental strand, 27473338 - 27472945
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  |||||||||||  |||| |  || |  ||||||||   ||||||||||||      
T  27473338 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtggtcatagg-gtaatgattagggtcatgtttggagagtatt 27473240  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaa-gcgaaatcgcagcacaactgcgattttgctgtcaccgt-------gcgtttcttactctctcagt 480  Q
     ||||||||||||||||||||||  ||||||||| |||||||||||||  |||||||||||||||||||  ||       |||||| ||| | |||||||    
T  27473239 ggatcgaaaacggagtcgaaaagatttccccaaaagcgaaatcgcagctgaactgcgattttgctgtcagtgtgcaaaacgcgttt-ttattgtctcagt 27473141  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||   || | |||||||||| |||||  ||  |||||| |||||||||||  | ||||| | ||||||||| ||||||||||||||    
T  27473140 ttgacaagtttaagtttcaaactaggtttaggtgccttcacgaaatttgtagatatggatgttatctgtcactcggctttggaggcacttgatttaagca 27473041  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
      |||| ||| | ||||||||||| ||| ||| |||| |||| | || ||| ||  ||||| || ||| ||  ||| |||||||||||||||||||    
T  27473040 catagaactctagatatgatcaaattactacacaggggtcagcaggggtcagcacagtcgtcctcttttcccgagcataggaaaatcaacttttct 27472945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 29718075 - 29718262
Alignment:
Q  80 ccgcgtttttggagaattcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatgg---ggttgt-ttacttcttaatatgatgttg 175  Q
    ||||||||| ||| |||||||||| |  |||||||| |||||||||| |||||||||||| ||||||||   |||||| |||  | |||||||| |||||    
T  29718075 ccgcgttttcggataattcgaggtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttg 29718174  T
Q  176 ttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||| |||||| ||| ||| |||||| | | |||||| |||||||||||||||||||||| || |||||| ||| ||||||||||||    
T  29718175 ttgttatgatgtga-attttgatgagagaatgatgatgaatgaattaaaagatgaagttgaaagatgagaattaagg-aaactagtttag 29718262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 487 - 608
Target Start/End: Original strand, 22497663 - 22497783
Alignment:
Q  487 agtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctaga 586  Q
    ||||||| |||| ||||||||| |||| ||||||| || ||||||| |||| ||||||| |||||||| ||||||||||||||  |||||||||||||||    
T  22497663 agtttaatttctaaattgggtt-aggtatcttcatgaaagttgtagatatgaatgttagctttcactatcctttggagggactccatttaagcatctaga 22497761  T
Q  587 tctcaatatatgatcaaaatac 608  Q
     ||||| ||||| |||||||||    
T  22497762 actcaagatatggtcaaaatac 22497783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 404
Target Start/End: Original strand, 18985404 - 18985517
Alignment:
Q  290 ttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacat 389  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | || |||| |||| | |||||||| || ||||| ||||  |     
T  18985404 ttaaaaagagtggacaatctggtaggttaacgaagaattagtgtttgaatgataggttgatgatgg-agtgcagattagggtcgaatttggcgagtttag 18985502  T
Q  390 gatcgaaaacggagt 404  Q
    | |||||||||||||    
T  18985503 ggtcgaaaacggagt 18985517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 24788540 - 24788461
Alignment:
Q  169 gatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaatt 248  Q
    |||||||||||||| ||||||||||||||  ||||||| | ||||| | |||||||||||||||||||||||| ||||||    
T  24788540 gatgttgttgttatgatgtgagattgtgatcagagattgatgatgagctaattaaaagatgaagttgaaatatgagaatt 24788461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 26861388 - 26861449
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaat 350  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  || |||||||||||    
T  26861388 cttaaaaagagtggataatctggtaggttaatgaagaattaatgttctaacgatagggtaat 26861449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 13361904 - 13361844
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    ||||||||||||||||||||||||||| | ||||||| ||||   ||||||||||||||||    
T  13361904 aaaagagtggataatctggtaggttaatggagaattagtgttacgatgatagggtaatcat 13361844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 21554099 - 21554185
Alignment:
Q  169 gatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaa 255  Q
    |||||||||||||| ||||||||| ||||  |||||||    | |||| ||||||||||||||||||||  || ||||| |||||||    
T  21554099 gatgttgttgttatgatgtgagatggtgattagagattgctaacgaacaaattaaaagatgaagttgaaggatgagaatagaggaaa 21554185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 10039215 - 10039275
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  10039215 aaaagagtggttaatcaggtaggttagtgatggattaacgttttaatgatagggtaatcat 10039275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 20916259 - 20916211
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  20916259 gaattaaaagatgaaattgaaagctgagaattaaggaaaactagtttag 20916211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 23908603 - 23908509
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagt 385  Q
    |||||||| | || |||||| || |||||||| ||  | || ||||||||||||||| ||||||| || |||||||||||||| |||||||| ||||    
T  23908603 cttaaaaataatgaataatccggaaggttaacaaatgaatagtgtttgaatgatagg-taatcataga-gtgaatattagggtcgagtttggtgagt 23908509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 34858292 - 34858340
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  34858292 gaattaaaagatgaaattgaaagttgagaattaaggaaaactagtttag 34858340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 34873354 - 34873402
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  34873354 gaattaaaagatgaaattgaaagttgagaattaaggaaaactagtttag 34873402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 147; Significance: 4e-77; HSPs: 2)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 170 - 603
Target Start/End: Original strand, 808 - 1241
Alignment:
Q  170 atgttgttgttattatg-tgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtac 268  Q
    ||||||||| | ||||| ||||||| ||| |||||||||| |||||||||||| ||||| |||||||||| || ||||||||||||||||  ||| |       
T  808 atgttgttgctgttatgatgagattatgacgagagatttatgatgaacgaattcaaagacgaagttgaaagatgagaattgaggaaaacttattttggtt 907  T
Q  269 tttgaattaagnnnnnnngacttaaaaag-agtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatatta 367  Q
    |||||||| ||         ||| ||||| ||||| |||||   ||||||||| |||| ||| ||||| | |||||| ||||||||| | ||||| ||||    
T  908 tttgaattgagtttctttagctttaaaaggagtgggtaatccaataggttaacaaagagttagtgttttattgatagtgtaatcatg-aggtgaagatta 1006  T
Q  368 gggttgagtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttc 467  Q
    |||| | |||||||||||| | |||  |||| |||||||||||||| || | |||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  1007 gggtcgtgtttggagagtatacgataaaaaatggagtcgaaaagggctcac-aaagtgaaatcgcagcagaactgtgattttgctgtcaccgtgcgtttc 1105  T
Q  468 ttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggaggga 567  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||||| || |||| || |||||||| ||  |||||||||||||||||| ||    
T  1106 ttactgtctcagtttgacaagtttaagttctgaactgggtttaagtgtcttcatgaaagttgcagatatggatggtatctttcactagcctttggagtga 1205  T
Q  568 cttgatttaagcatctagatctcaatatatgatcaa 603  Q
    || ||||||||| ||||||  || ||||||||||||    
T  1206 ctcgatttaagcgtctagaaatctatatatgatcaa 1241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 500 - 607
Target Start/End: Original strand, 1329 - 1436
Alignment:
Q  500 aattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatga 599  Q
    |||| ||||| | ||||||||| || ||||||| |||||||||||  ||||| |||||||| ||||||||  ||||||| ||||||| ||||||||||||    
T  1329 aattaggttttgatgtcttcatgaaagttgtagatatggatgttaaatttcagtagcctttagagggactctatttaagtatctagaactcaatatatga 1428  T
Q  600 tcaaaata 607  Q
    | ||||||    
T  1429 tgaaaata 1436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 138; Significance: 9e-72; HSPs: 3)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 312 - 617
Target Start/End: Complemental strand, 14472 - 14168
Alignment:
Q  312 taggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaaacggagtcgaaaag 411  Q
    |||||| || |||||||| |||||||||||||| ||||||||||  ||||| || |||||||||||||||||||| |||||| |||||| ||||||||||    
T  14472 taggtttacaaagaattagtgtttgaatgatagtgtaatcatggg-gtgaagataagggttgagtttggagagtatatgatcaaaaacgaagtcgaaaag 14374  T
Q  412 ggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgtgcgtttcttactctctcagtttgacaagtttaagttctgaattgggtttag 511  Q
    ||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||  || |||||||||    
T  14373 ggttccttaaagtgaaatcgcagcagaactgcgattttgctgtcaccgtgcgtttcttactgtctcagttttgcaagtttaagttccaaactgggtttag 14274  T
Q  512 gtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaataccac 611  Q
     |||||   | || ||||||  |||||||||||  |||||||| ||||||||| |||| ||||||||| |||| | ||| | ||||||||||||||| ||    
T  14273 ttgtctgtgtgaaagttgtatatatggatgttatctttcactaacctttggagtgactcgatttaagcgtctataactctagatatgatcaaaatactac 14174  T
Q  612 aaaggg 617  Q
    | ||||    
T  14173 acaggg 14168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 608
Target Start/End: Complemental strand, 14079 - 13986
Alignment:
Q  515 tcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaatac 608  Q
    ||||||| || ||||||| |||||||  ||| |||||||||||||||||| ||||  ||||| | ||||| | ||||| ||||||| |||||||    
T  14079 tcttcatgaaagttgtagatatggattctagatttcactagcctttggagagactctatttaggtatctataactcaagatatgatgaaaatac 13986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 14588 - 14523
Alignment:
Q  199 gagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgagg-aaaactagttta 264  Q
    |||||||||| ||||||| ||||||||||||||||||||| || ||||| |||| |||||| |||||    
T  14588 gagagatttatgatgaac-aattaaaagatgaagttgaaagatgagaatagaggaaaaacttgttta 14523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 111 - 353
Target Start/End: Complemental strand, 17451509 - 17451265
Alignment:
Q  111 agaatctttgcacttttgagtatcttaatatatgatgg-ggttgtttacttcttaatatgatgttgttgttattatgtgagattgtgaggagagatttac 209  Q
    |||||||||||||||| | ||||||||||||||||||| || |  ||| ||||||| ||||||||| | |||| |||||||||||||| ||||||||||     
T  17451509 agaatctttgcactttagggtatcttaatatatgatggagggtaattaattcttaagatgatgttgctcttatgatgtgagattgtgatgagagatttat 17451410  T
Q  210 gatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaag-nnnnnnngacttaaaaagagtggataatc 308  Q
    |||||| |||||||||||||||||||||| || ||||||||||||| |||||||||   ||| | || ||        | |||||||| |||||||||||    
T  17451409 gatgaaagaattaaaagatgaagttgaaagatgagaattgaggaaagctagtttaggtttttaagttgagtttttttagccttaaaaatagtggataatc 17451310  T
Q  309 tggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||||| |||| ||| |||||||||||||||||||||||    
T  17451309 tggtaggttaactaagagttagtgtttgaatgatagggtaatcat 17451265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 15544220 - 15544090
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||  ||||| |||| ||  |||||||||||||| |    
T  15544220 cttaaaaagagtggataatctggtaggttaacaaagaattagtgtttgattgatagggtaatcatgg-ggtgaagattatggccgagtttggagagtata 15544122  T
Q  389 tgatcgaaaacggagtcgaaaagggttcccca 420  Q
    ||||| ||||||||||||||||||||||||||    
T  15544121 tgatctaaaacggagtcgaaaagggttcccca 15544090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 21496480 - 21496366
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||| ||||||||||  |||  | | ||||| |||||  || ||||||||| ||||||||||||||||| |||||| ||||  |    
T  21496480 cttaaaaagagtggataatccggtaggttaaaaaaggttcagtgtttaaatgacgggataatcatgg-agtgaatattagggttgtgtttggcgagttta 21496382  T
Q  389 tgatcgaaaacggagt 404  Q
     | |||||||||||||    
T  21496381 gggtcgaaaacggagt 21496366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 21496565 - 21496509
Alignment:
Q  210 gatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagt 266  Q
    ||||||| |||| |||||||||||||||  || |||||||| |||||||||||||||    
T  21496565 gatgaacaaattgaaagatgaagttgaatgatgagaattgacgaaaactagtttagt 21496509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 551
Target Start/End: Complemental strand, 17451218 - 17451123
Alignment:
Q  456 accgtgcgtttcttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttca 551  Q
    ||||||| |||| |||| |||| ||||| ||||||||||||| ||||| ||||| || |||||||| ||  || |||  ||||||||||| |||||    
T  17451218 accgtgcatttcatactgtctctgtttggcaagtttaagttccgaattaggtttgggcgtcttcatgaaaattatagacatggatgttagatttca 17451123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 15544348 - 15544303
Alignment:
Q  147 ggggttgtttacttcttaatatgatgttgttgttattatgtgagat 192  Q
    ||||||||||| ||||||| |||||||||||||||| || ||||||    
T  15544348 ggggttgtttaattcttaagatgatgttgttgttatgatatgagat 15544303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 21995764 - 21995812
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  21995764 gaattaaaagatgaaattgaaagttgagaattaaggaaaactagtttag 21995812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 108 - 457
Target Start/End: Original strand, 11516 - 11858
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggggttgtttacttcttaatatgatgttgttgttattatgtgagattgtgaggagagattt 207  Q
    ||||||||||||||||||| | |||||||||||||||| |||| |||||| |||||||      |||| |||||| |||||||||||||| |||||||||    
T  11516 gggagaatctttgcactttagggtatcttaatatatgacgggggtgtttatttcttaa------gttgatgttatgatgtgagattgtgatgagagattt 11609  T
Q  208 acgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaag-nnnnnnngacttaaaaagagtggataa 306  Q
    | ||| |||||||||||||||| || ||||| || |||||||| |||||||||||||    |||||||| ||        | ||||||| ||||||||||    
T  11610 atgataaacgaattaaaagatgcagatgaaagatgagaattgaagaaaactagtttatgtttttgaattgagtttttttagccttaaaatgagtggataa 11709  T
Q  307 tctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaaacggagtcg 406  Q
    || |||| |||||| |||||||| ||||| || |||| | ||||||| || ||||| |||| ||  ||||||||||| || | |||||||||||| |||     
T  11710 tccggtaagttaacaaagaattagtgtttcaacgataagataatcat-gaggtgaagattacggccgagtttggagaatataggatcgaaaacggtgtca 11808  T
Q  407 aaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcac 457  Q
    |||||||||| |||| |||||||||  | | ||||| ||||||||||||||    
T  11809 aaaagggttctccaaggcgaaatcg-tgtagaactgtgattttgctgtcac 11858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 459 - 679
Target Start/End: Original strand, 11900 - 12111
Alignment:
Q  459 gtgcgtttcttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcct 558  Q
    |||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||| |||||  |||||| |||||||||||| ||||||||||||    
T  11900 gtgcgtttcttaccgtctcagtttggcaagtttaagttatgaattgggtttaggtgtctttataaaatttgtagatatggatgttagttttcactagcct 11999  T
Q  559 ttggagggacttgatttaagcatctagatctcaatatatgatcaaaataccacaaagggttcagaaggatcaacaaggtcgtgctttttccctaagctta 658  Q
    || || |||||  ||||||  |||||||  |||| |||||||||||||||         | || |||| |||||||||| |||||||||||| || ||||    
T  12000 ttagatggactcaatttaaaaatctagaaatcaagatatgatcaaaatac---------tacacaagggtcaacaaggttgtgctttttccccaaactta 12090  T
Q  659 ggaaaatcaacttttctacca 679  Q
    |||||||||||||||||||||    
T  12091 ggaaaatcaacttttctacca 12111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 289 - 675
Target Start/End: Complemental strand, 12202 - 11809
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||      
T  12202 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcatagg-gtaatgattagggtcatgtttggagagtatt 12104  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
     ||||||||||||||||||||||  |||||||||| ||||||||||||  |||||||||||||||||||  ||||       |||| ||| | |||||||    
T  12103 ggatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctgtcagtgtgcaaaacacgttt-ttattgtctcagt 12005  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| |||||||||||| |||||  || ||||||| |||||||||||  | ||||| | ||||||||| ||| ||||||||||    
T  12004 ttgacaagtttaagtttcgaactgggtttaggtgccttcacgaaagttgtagatatggatgttatctgtcactcggctttggaggcactcgatttaagca 11905  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
      |||| ||||| ||||||||||| ||| ||| |||| |||| | |||||||||  ||||| || ||| |   ||| |||||||||||||||||||    
T  11904 catagaactcaaaatatgatcaaattactacacaggggtcagcagggatcaacacagtcgtcctcttttcacgagcataggaaaatcaacttttct 11809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 289 - 675
Target Start/End: Complemental strand, 5182 - 4789
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||      
T  5182 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcatagg-gtaatgattagggtcatgtttggagagtatt 5084  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
     ||||||||| ||||||||||||  |||||||||| ||||||||||||  |||||||||||||||||||  ||||       |||| ||| | |||||||    
T  5083 ggatcgaaaatggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctgtcagtgtgcaaaacacgttt-ttattgtctcagt 4985  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| |||||||||||   ||||  || ||||||| |||||||||||  | ||||| |  |||||||| ||| ||||||||||    
T  4984 ttgacaagtttaagtttcgaactgggtttaggttctttcacgaaagttgtagatatggatgttatctgtcactcgtgtttggaggcactcgatttaagca 4885  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
      |||| ||||| ||||||||||| ||| ||| |||| |||| | |||||||||  ||||| || ||| |   ||| |||||||||||||||||||    
T  4884 catagaactcaaaatatgatcaaattactacacaggggtcagcagggatcaacacagtcgtcctcttttcacgagcataggaaaatcaacttttct 4789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 217 - 616
Target Start/End: Complemental strand, 1391 - 988
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnngacttaaaaagagtggataatctggtaggt 316  Q
    ||||||||||||||| |||||| || |||||| ||||||||||||||||   || ||||| ||       | |||||||||||||||||||   ||||||    
T  1391 gaattaaaagatgaaattgaaagatgagaattaaggaaaactagtttaggt-ttcgaattgagtttcta-gtcttaaaaagagtggataatacagtaggt 1294  T
Q  317 taacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaaacggagtcgaaaagggttc 416  Q
    | | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||    |||||||||||||||||||||  |||    
T  1293 tgatgaataattagtgttataatgatagggttatcatagg-gtaatgattagggtcatgtttggagagtattgtatcgaaaacggagtcgaaaagatttc 1195  T
Q  417 cccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagtttgacaagtttaagttctgaattgggtt 508  Q
    ||||||| ||||||||||||  |||||||| ||||||||||  ||||       |||| ||| | |||||||||||||||||||||||  ||| ||||||    
T  1194 cccaaaggcgaaatcgcagctgaactgcgactttgctgtcagtgtgcaaaacgcgttt-ttattgtctcagtttgacaagtttaagtttcgaactgggtt 1096  T
Q  509 taggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaatac 608  Q
    ||||||||||||  || |||||||  ||||||||||  | ||||| | ||||||||| ||| ||||||||||  |||| ||||| ||||||||||| |||    
T  1095 taggtgtcttcacgaaagttgtagacatggatgttatctgtcactcggctttggaggaactcgatttaagcacatagaactcaagatatgatcaaattac 996  T
Q  609 cacaaagg 616  Q
     |||||||    
T  995 tacaaagg 988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 162 - 385
Target Start/End: Original strand, 11899 - 12118
Alignment:
Q  162 ttaatatgatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagt 261  Q
    |||||||| ||||| |||||| |||| | ||| ||| |||| ||||| ||||||||||||||||||||||||||||  || |||| ||||||||||||||    
T  11899 ttaatatgttgttgctgttatgatgtaa-attttgatgagaaatttatgatgaacgaattaaaagatgaagttgaatgatgagaaatgaggaaaactagt 11997  T
Q  262 ttagtactttgaattaagnnnnnnngacttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtga 361  Q
    ||||   |||||||| ||       |  |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | || |||| ||||     
T  11998 ttaggtttttgaattgagtttta--gttttaaaaagagtggataatctggtaggttaacgaagaattagtgtttgaattataggttgatgatgg-agtgc 12094  T
Q  362 atattagggttgagtttggagagt 385  Q
    | |||||||| |||||||| ||||    
T  12095 agattagggtcgagtttggcgagt 12118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 375 - 604
Target Start/End: Original strand, 46579976 - 46580212
Alignment:
Q  375 gtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gttt 466  Q
    ||||||||||||   ||||||||||||||||||||||  || ||||||| ||||||||||||  |||||||||||||||||||  ||||       ||||    
T  46579976 gtttggagagtattggatcgaaaacggagtcgaaaagatttacccaaaggcgaaatcgcagctgaactgcgattttgctgtcagtgtgcaaaacgcgttt 46580075  T
Q  467 cttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggaggg 566  Q
     ||| | |||||||||||||||||||| || |||| |||||||||||| ||||| ||| ||||||| |||||||||||  | ||||| |  ||||||||     
T  46580076 -ttattgtctcagtttgacaagtttaacttttgaactgggtttaggtgccttcacaaaagttgtagatatggatgttatatgtcactcggatttggaggc 46580174  T
Q  567 acttgatttaagcatctagatctcaatatatgatcaaa 604  Q
    ||| ||||||||||  |||| ||||| |||||||||||    
T  46580175 actcgatttaagcacatagaactcaagatatgatcaaa 46580212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 11800151 - 11800265
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||  |    
T  11800151 cttaaaaagaatggataatctggtaggttaaagaagaattagtgtttcaatgatagggtaatcatgg-agtgaagattagggttgagtttggcgagttta 11800249  T
Q  389 tgatcgaaaacggagt 404  Q
     | |||||||||||||    
T  11800250 gggtcgaaaacggagt 11800265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 622
Target Start/End: Complemental strand, 11091529 - 11091190
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||    |||||| | ||| ||||| ||||  ||||||||||||||||| |  || |  ||||||||   ||||||||||||      
T  11091529 cttaaaaagagtggataatacattaggttgatgaataattagtgttataatgatagggtaatcatagg-gtaatgattagggtcatgtttggagagtatt 11091431  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
     ||||||||| ||||| ||||||  |||| ||||| ||||||||||||  |||| ||||||||||||||  ||||       |||| ||| | |||||||    
T  11091430 ggatcgaaaatggagttgaaaagatttcctcaaaggcgaaatcgcagctgaactacgattttgctgtcagtgtgcaaaatgcgttt-ttattgtctcagt 11091332  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| ||||||||||| ||||| |||| ||||||| |||||||||||  | ||||| | ||||||||| ||| ||||||||||    
T  11091331 ttgacaagtttaagtttcgaaatgggtttaggtttcttcgtaaaagttgtagatatggatgttatttgtcactcggctttggaggcactcgatttaagca 11091232  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag 622  Q
      || | ||||| |||| |||||| ||| ||| |||| ||||    
T  11091231 catataactcaagatataatcaaattactacacaggggtcag 11091190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 508 - 675
Target Start/End: Complemental strand, 11310169 - 11310001
Alignment:
Q  508 ttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaata 607  Q
    |||||||| |||| ||| ||||||| ||| |||||||  | |||||||||||| |||| ||| |||||||| |  |||| ||||| ||||||||||||||    
T  11310169 ttaggtgttttcacaaaagttgtaggtatagatgttatctgtcactagcctttagaggcactcgatttaagtacatagaactcaagatatgatcaaaata 11310070  T
Q  608 ccacaaagggttcagaag-gatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
    | ||| || | |||  || |||||||| ||||||||| ||||||  |||||||||||||||||||||||    
T  11310069 ctacagagaggtcaatagagatcaacacggtcgtgctctttccccgagcttaggaaaatcaacttttct 11310001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 675
Target Start/End: Complemental strand, 48812732 - 48812530
Alignment:
Q  474 tctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgat 573  Q
    ||||| |||||||||||||||||  ||| |||||||||||| ||||| ||| ||||||| |||||||||||  | ||||| | ||||||||| |||  |     
T  48812732 tctcaatttgacaagtttaagtttcgaactgggtttaggtgccttcacaaaagttgtagatatggatgttatctgtcactcggctttggaggcactccag 48812633  T
Q  574 ttaagcatctagatctcaatatatgatcaaaataccaca-aagggttcagaaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttt 672  Q
    || ||||  |||| ||||| ||||||||||| ||| ||| ||||||  | | |||||| ||  ||||| || ||| ||  ||| ||||||||||||||||    
T  48812632 tttagcacatagaactcaagatatgatcaaattactacacaagggtcaacagggatcagcacagtcgtcctcttttcccgagcataggaaaatcaacttt 48812533  T
Q  673 tct 675  Q
    |||    
T  48812532 tct 48812530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 9693168 - 9693231
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatgga 356  Q
    ||||||||||||||||||||||||||| ||| ||||  | ||||||||||||||||||||||||    
T  9693168 aaaagagtggataatctggtaggttaatgaataattggtatttgaatgatagggtaatcatgga 9693231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 16068064 - 16068226
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggg---gttgt-ttacttcttaatatgatgttgttgttattatgtgagattgtgaggagag 203  Q
    ||||||||||||||| ||| | |||||||||| ||||| |||   ||||| |||  | |||||||| ||||  |||||| |||||| ||| ||| ||||     
T  16068064 gggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtga-attttgatgagaa 16068162  T
Q  204 atttacgatgaacgaatt-aaaagatgaagttgaaatatcagaattgaggaaaactagtttagt 266  Q
    | | | ||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  16068163 aatgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagt 16068226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 23089277 - 23089191
Alignment:
Q  169 gatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaa 255  Q
    |||||||||||||| || |||||||||||  |||||||   || ||||||||||||| | |||||||||| || |||||||||||||    
T  23089277 gatgttgttgttatgatatgagattgtgattagagattgctgacgaacgaattaaaatacgaagttgaaagatgagaattgaggaaa 23089191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 534 - 617
Target Start/End: Original strand, 16379627 - 16379710
Alignment:
Q  534 tatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaataccacaaaggg 617  Q
    |||||||||||| ||||| | |||| ||||||||||  || |||| ||||||| ||||||||||||| ||||||| ||| ||||    
T  16379627 tatggatgttagctttcattggcctctggagggactctatgtaagtatctagaactcaatatatgatgaaaatactacacaggg 16379710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 9692996 - 9693036
Alignment:
Q  109 ggagaatctttgcacttttgagtatcttaatatatgatggg 149  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  9692996 ggagaatctttgcactttagagtatcttaatctatgatggg 9693036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 11085472 - 11085424
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  11085472 gaattaaaagatgaaattgaaaactgagaattaaggaaaactagtttag 11085424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 11091598 - 11091550
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  11091598 gaattaaaagatgaaattgaaagctgagaattaaggaaaactagtttag 11091550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 551
Target Start/End: Original strand, 12346615 - 12346667
Alignment:
Q  499 gaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttca 551  Q
    ||||||| ||||||||||||||| || ||||||| |||| ||||||| |||||    
T  12346615 gaattggatttaggtgtcttcatgaaagttgtagatatgtatgttagatttca 12346667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 15214450 - 15214390
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  15214450 aaaagagtggttaatcgggtaggttagtgatggattaacgtttcaatgatagggtaatcat 15214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 38829032 - 38828972
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  38829032 aaaagagtggttaatcaggtaggttagtgatggattaacgttttaatgatagggtaatcat 38828972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 46579859 - 46579907
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  46579859 gaattaaaagatgaaattgaaagttgagaattaaggaaaactagtttag 46579907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 289 - 622
Target Start/End: Complemental strand, 68179 - 67840
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||      
T  68179 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcatagg-gtaataattagggtcatgtttggagagtatt 68081  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaa-gcgaaatcgcagcacaactgcgattttgctgtcaccgtg-----cgt-ttcttactctctcagtt 481  Q
     ||||||||||||||||||||||  ||||||||| |||||||||||||  |||||||||||||||||||  |||     ||| || ||| | ||||||||    
T  68080 ggatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctgtcagtgtgcaaaacgtgtttttattgtctcagtt 67981  T
Q  482 tgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcat 581  Q
    |||||||||||||||  ||| ||| |||||||| |||||  || ||||||  |||||||| ||  | ||||| | ||||||||| ||| ||||||||||     
T  67980 tgacaagtttaagtttcgaactggatttaggtgccttcacgaaagttgtatatatggatgatatctgtcactcggctttggaggcactcgatttaagcac 67881  T
Q  582 ctagatctcaatatatgatcaaaataccacaaagggttcag 622  Q
     |||| ||||| |||| |||||| ||| ||| |||| ||||    
T  67880 atagaactcaagatataatcaaattactacacaggggtcag 67840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 290 - 675
Target Start/End: Complemental strand, 27852087 - 27851695
Alignment:
Q  290 ttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacat 389  Q
    ||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||       
T  27852087 ttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcatagg-gtaatgattagggtcatgtttggagagtattg 27851989  T
Q  390 gatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagtt 481  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||  ||||||||||||||| |||  ||||       |||| ||| | || |||||    
T  27851988 gatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctatcaatgtgcaaaacacgttt-ttattgtcgcagtt 27851890  T
Q  482 tgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcat 581  Q
    |||||||||||||||  ||| |||||||||||| | |||  || ||||||  |||||||||||  | || |||| ||||||||| ||| ||||||||||     
T  27851889 tgacaagtttaagtttcgaactgggtttaggtgccctcacgaaagttgtatatatggatgttatctgtccctaggctttggaggtactcgatttaagcac 27851790  T
Q  582 ctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
     |||| |||||  |||||||||| ||| ||| |||| |||| | |||||| ||  ||||| || ||| ||  ||| |||||||||||||||||||    
T  27851789 atagaactcaagttatgatcaaattactacacaggggtcagcagggatcagcacagtcgtcctcttttcccgagcataggaaaatcaacttttct 27851695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 19545316 - 19545430
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||| |||||||| | |||||| ||||  |    
T  19545316 cttaaaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgatagggtgatgatgg-agtgaagattagggtcgggtttggcgagttta 19545414  T
Q  389 tgatcgaaaacggagt 404  Q
     | |||||||||||||    
T  19545415 gggtcgaaaacggagt 19545430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 604
Target Start/End: Original strand, 20733414 - 20733735
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||| ||||||||| | | | |  ||||||||   ||||||||||||      
T  20733414 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataaggtaatcatagga-taatgattagggtcatgtttggagagtatt 20733512  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgcgt------ttcttactctctcagtt 481  Q
     ||||||||||||||| ||||||  |||||||||| ||||||||||||  ||||||||||||||||||   ||||        || ||| | ||||||||    
T  20733513 ggatcgaaaacggagttgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctgtcggtgtgcaaaacgcatttttattgtctcagtt 20733612  T
Q  482 tgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcat 581  Q
    |||| ||||||| ||  ||| |||||||||||| |||||  || ||||||| |||||||||||  | ||||| | ||||||||| ||| ||||||||||     
T  20733613 tgacgagtttaaatttcgaactgggtttaggtgccttcacgaaagttgtagatatggatgttatctgtcactcggctttggaggcactcgatttaagcac 20733712  T
Q  582 ctagatctcaatatatgatcaaa 604  Q
     |||| |||||  ||||||||||    
T  20733713 atagaactcaagttatgatcaaa 20733735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 607
Target Start/End: Original strand, 19545722 - 19545816
Alignment:
Q  513 tgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaata 607  Q
    ||||||||| || || |||| ||| |||||||| |||||||||||||||||||||||  ||||||| ||||| | ||||| ||||||| ||||||    
T  19545722 tgtcttcatgaaagtggtagatatcgatgttagctttcactagcctttggagggactctatttaagtatctataactcaagatatgatgaaaata 19545816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 22395628 - 22395723
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagt 385  Q
    ||||||||||||| |||||| ||||||||||| ||  |||| ||||||||||||||| |||||| ||  ||||| |||||||| ||||||| |||||    
T  22395628 cttaaaaagagtgaataatccggtaggttaacaaatgattagtgtttgaatgataggttaatcacgg-ggtgaagattagggtcgagtttgaagagt 22395723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 1254729 - 1254669
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | |||||||||| |||||||||||||||||    
T  1254729 aaaagagtggttaatcgggtaggttagtgatggattaatgtttcaatgatagggtaatcat 1254669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 14746476 - 14746370
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgat 392  Q
    ||||||||| | |||  ||||||||||| ||  |||| ||||| ||||||||| ||||| | || ||||| ||||||||||||||||| ||||  | |||    
T  14746476 aaaagagtgaacaattcggtaggttaacaaatgattagtgttttaatgataggttaatcgtaga-gtgaagattagggttgagtttggcgagtttaggat 14746378  T
Q  393 cgaaaacg 400  Q
    ||||||||    
T  14746377 cgaaaacg 14746370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 14971549 - 14971466
Alignment:
Q  172 gttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaa 255  Q
    |||||||||||||| |||||||||||  ||||||    || |||||||||||||   |||||||||| || |||||||||||||    
T  14971549 gttgttgttattatatgagattgtgattagagatcgttgacgaacgaattaaaatgcgaagttgaaagatgagaattgaggaaa 14971466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 22395465 - 22395506
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggg 149  Q
    |||||| |||||||||||| | ||||||||||||||||||||    
T  22395465 gggagagtctttgcactttagggtatcttaatatatgatggg 22395506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 7680768 - 7680828
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | |||||||||  |||||||||||||||||    
T  7680768 aaaagagtggttaatcaggtaggttagtgagggattaatgttctaatgatagggtaatcat 7680828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 20733344 - 20733392
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  20733344 gaattaaaagatgaaattgaaagctgagaattaaggaaaactagtttag 20733392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 26587898 - 26587842
Alignment:
Q  94 aattcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatgggg 150  Q
    |||||||||| |  |||||||||||| |||||| | |||||||||| ||||||||||    
T  26587898 aattcgaggtaaaggggagaatcttttcactttagggtatcttaatctatgatgggg 26587842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 27868450 - 27868561
Alignment:
Q  290 ttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacat 389  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |||| |||||||||||||||||||||||| ||||  |     
T  27868450 ttaaaaagagtggataatctggtaggttaacgaagaattgatgtttgaatgataggttgattatgg-agtgaatattagggttgagtttggcgagtttag 27868548  T
Q  390 gatcgaaaacgga 402  Q
    | |||||||||||    
T  27868549 ggtcgaaaacgga 27868561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 289 - 675
Target Start/End: Original strand, 52989028 - 52989421
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaat-attagggttgagtttggagagtac 387  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| |||||  | |  ||| ||||||||   ||||||||||||     
T  52989028 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcat--atgataatgattagggtcatgtttggagagtat 52989125  T
Q  388 atgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-----gt-ttcttactctctcagt 480  Q
      |||||||||| |||||||||||  || ||||||| |||||||||| |  |||| ||||||||||||||  ||||     || || |||   |||||||    
T  52989126 tggatcgaaaacagagtcgaaaagattttcccaaaggcgaaatcgcaactgaactacgattttgctgtcagtgtgcaaaacgtgtttttatagtctcagt 52989225  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| ||| |||||||| |||||  || ||||||| |||||||||||  | ||||| | ||||||||| |||  |||||||||    
T  52989226 ttgacaagtttaagtttcgaactggatttaggtgccttcacgaaagttgtagatatggatgttatctgtcactcggctttggaggcactcaatttaagca 52989325  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
      |||| ||||| ||||||||||| ||| ||| |||| |||| | |||||||||  ||||| || ||| ||  ||| |||||||||||| ||||||    
T  52989326 catagaactcaagatatgatcaaattactacacaggggtcagcagggatcaacacagtcgtcctcttttcccgagcataggaaaatcaatttttct 52989421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 10302664 - 10302601
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatgga 356  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10302664 aaaagagtggataatctggtaggttaacgaagaattagtgtttgaatgatagggtaatcatgga 10302601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 22161669 - 22161555
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||| ||| | ||||||||| |||||||| ||||  |    
T  22161669 cttaaaaagagtggataatcaggtaggttaatgaagaattagtgtttgaatgatagggtagtcatgg-agtaactattagggtcgagtttggcgagttta 22161571  T
Q  389 tgatcgaaaacggagt 404  Q
     | |||||||||||||    
T  22161570 gggtcgaaaacggagt 22161555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 21999474 - 21999379
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagt 385  Q
    |||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| |||||| ||| ||||||||||| |||||||| ||||    
T  21999474 cttaaaaagagtggataatcaggtaggttaatgaagaattagtgtttgaatgacagggtagtcatgg-agtaaatattagggtcgagtttggcgagt 21999379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 474 - 550
Target Start/End: Original strand, 3264275 - 3264351
Alignment:
Q  474 tctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttc 550  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||| |||||||||||| ||||    
T  3264275 tctcagtttgacaagtttaagttccgaactgggtttaggtgtcttcatgaaagttgtaggtatggatgttagatttc 3264351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 508 - 675
Target Start/End: Original strand, 3264502 - 3264670
Alignment:
Q  508 ttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaata 607  Q
    |||||||||||||  || ||||||| |||||||||||  | |||||||| |||||||  ||| ||||| ||||  |||| |||||  |||||||||||||    
T  3264502 ttaggtgtcttcacgaaagttgtaggtatggatgttatctgtcactagcatttggagacactcgatttgagcacatagaactcaagctatgatcaaaata 3264601  T
Q  608 ccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
    | ||| || | |||| | ||||||||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  3264602 ctacacagaggtcagtagggatcaacacggtcgtgctctttccccgagcttaggaaaaccaacttttct 3264670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 21977039 - 21976948
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagt 385  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| |||||| ||| ||||||||||| |||||||| ||||    
T  21977039 aaaagagtggataatcaggtaggttaatgaagaattagtgtttgaatgacagggtagtcatgg-agtaaatattagggtcgagtttggcgagt 21976948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 526 - 675
Target Start/End: Complemental strand, 36528358 - 36528208
Alignment:
Q  526 gttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaataccacaaagggttcag-aa 624  Q
    ||||||| |||||||||||  | ||||||||||||||||| ||| ||||||||||  |||| |||||  |||||||||||||| ||| || | |||| |     
T  36528358 gttgtaggtatggatgttatctgtcactagcctttggaggcactagatttaagcacatagaactcaagttatgatcaaaatactacacagaggtcagcag 36528259  T
Q  625 ggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
    |||| |||| || |||||| ||||||  |||||||| ||||||||||||||    
T  36528258 ggataaacacggccgtgctctttccccgagcttaggtaaatcaacttttct 36528208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 19186717 - 19186626
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagt 385  Q
    |||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||| |||||| |||||| |||| ||| |||||||| ||||    
T  19186717 aaaagagtgggtaatcaggtaggttaacaaagaattagtgtttgaatgatagggtagtcatgg-agtgaagattacggtcgagtttggcgagt 19186626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 10340990 - 10340927
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatgga 356  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||    
T  10340990 aaaagagtggataatccggtaggttaacgaagaattagtgtttgaatgataggttaattatgga 10340927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 375 - 544
Target Start/End: Complemental strand, 14966977 - 14966801
Alignment:
Q  375 gtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaa-gcgaaatcgcagcacaactgcgattttgctgtcaccgt-------gcgttt 466  Q
    ||||||||||||   ||||||||||||||||||||||  ||||||||| |||||||||||||  ||||||||||||||||| |  ||       ||||||    
T  14966977 gtttggagagtattggatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctgttagtgtgcaaaacgcgttt 14966878  T
Q  467 cttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgtta 544  Q
     ||| | ||||| |||||||||||||||||  ||| |||||| ||||| ||||| ||| ||||||  |||||||||||    
T  14966877 -ttattgtctcattttgacaagtttaagtttcgaactgggttaaggtgccttcacaaaagttgtatatatggatgtta 14966801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 298 - 403
Target Start/End: Original strand, 16358007 - 16358111
Alignment:
Q  298 agtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgatcgaaa 397  Q
    ||||||||||| ||||||||| |||||||||| ||||| |||||||||||| |||||| |||||| |||||||| || ||||| ||||  | | ||||||    
T  16358007 agtggataatcaggtaggttagcgaagaattagtgtttcaatgatagggtagtcatgg-agtgaagattagggtcgaatttggcgagtttagggtcgaaa 16358105  T
Q  398 acggag 403  Q
    ||||||    
T  16358106 acggag 16358111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 375 - 550
Target Start/End: Complemental strand, 36528707 - 36528527
Alignment:
Q  375 gtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaagcgaaatcgcagcacaactgcgattttgctgtcaccgt-------gcgtttc 467  Q
    ||||||||||||   ||||||||||||| |||||||   |||||||| |||||||||||||  |||||||||||||||||||  ||       |||||      
T  36528707 gtttggagagtaatggatcgaaaacggaatcgaaaatatttccccaaggcgaaatcgcagctgaactgcgattttgctgtcagtgttcaaaacgcgtt-- 36528610  T
Q  468 ttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttc 550  Q
    ||| | ||||||||||||||||||||||||  || |||||||||||||   ||  || ||||||| |||||||||||| ||||    
T  36528609 ttattgtctcagtttgacaagtttaagttccaaactgggtttaggtgtaaacacgaaagttgtaggtatggatgttagctttc 36528527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 16357810 - 16357867
Alignment:
Q  91 gagaattcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatggg 149  Q
    ||||||||||||| |  ||||||||||||||||||| | |||||||||| |||||||||    
T  16357810 gagaattcgaggtaag-gggagaatctttgcactttagggtatcttaatttatgatggg 16357867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 10302826 - 10302785
Alignment:
Q  108 gggagaatctttgcacttttgagtatcttaatatatgatggg 149  Q
    ||||||||||||||||||| | |||||||||| |||||||||    
T  10302826 gggagaatctttgcactttagggtatcttaatctatgatggg 10302785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 11913693 - 11913633
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  11913693 aaaagagtggttaatcgggtaggttagtgatggattaacgtttcaatgatagggtaatcat 11913633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 14647184 - 14647244
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  14647184 aaaagagtggttaatcaggtaggttagtgatggattaacgttttaatgatagggtaatcat 14647244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 14967136 - 14967088
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  14967136 gaattaaaagatgaaattgaaagttgagaattaaggaaaactagtttag 14967088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 19186888 - 19186848
Alignment:
Q  109 ggagaatctttgcacttttgagtatcttaatatatgatggg 149  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  19186888 ggagaatctttgcactttagggtatcttaatttatgatggg 19186848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 50755483 - 50755543
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | |||||||||  |||||||||||||||||    
T  50755483 aaaagagtggttaatcaggtaggttagtgatggattaatgttctaatgatagggtaatcat 50755543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 51602679 - 51602739
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  51602679 aaaagagtggttaatcgggtaggttagtgagggattaacgtttcaatgatagggtaatcat 51602739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 52988958 - 52989006
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  52988958 gaattaaaagatgaaattgaaagttgagaattaaggaaaactagtttag 52989006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 91 - 380
Target Start/End: Complemental strand, 16269 - 15980
Alignment:
Q  91 gagaattcgaggtgatagggagaatctttgcacttttgagtatcttaatatatgatggg---gttgt-ttacttcttaatatgatgttgttgttattatg 186  Q
    ||||||||||||| |  ||||||||||||| ||||| | |||||||||| |||||||||   || || |||  | ||||||   ||||| | |||| |||    
T  16269 gagaattcgaggtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatg 16170  T
Q  187 tgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnn 286  Q
    ||| ||| ||| ||| || | | |||||||||||| ||||||||| |||||| || | ||||||||||||||||||||    |||||||| ||           
T  16169 tga-attttgatgagtgaatgatgatgaacgaattgaaagatgaaattgaaagatgacaattgaggaaaactagtttaagtttttgaattgagtttta-- 16073  T
Q  287 gacttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttgg 380  Q
    | |||||||||||||||||||| ||||| |||| ||||||||| ||||||||| |||||||| |||||| ||||||||||||||  ||||||||    
T  16072 gtcttaaaaagagtggataatcaggtagtttaatgaagaattagtgtttgaatcatagggtagtcatgg-agtgaatattagggccgagtttgg 15980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 289 - 675
Target Start/End: Complemental strand, 13519 - 13126
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||||| ||||| |  || |  ||||||||   ||||||||||||      
T  13519 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgatagggtgatcatagg-gtaatgattagggtcatgtttggagagtatt 13421  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
     ||||||||| ||||||||||||  |||||||||| ||||||||||||  ||||| ||||||| |||||  ||||       |||| ||| | |||||||    
T  13420 ggatcgaaaaaggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgggattttgttgtcagtgtgcaaaacacgttt-ttattgtctcagt 13322  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| |||||||||||   ||||  || ||||||| |||||||||||  | ||||| |  |||||||| ||| ||||||||||    
T  13321 ttgacaagtttaagtttcgaactgggtttaggttctttcacgaaagttgtagatatggatgttatctgtcactcgtgtttggaggcactcgatttaagca 13222  T
Q  581 tctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
      |||| | ||| ||||||||||| ||| ||| |||| |||| | |||||| ||  ||||| || ||| ||  ||| |||||||||||||||||||    
T  13221 catagaacacaagatatgatcaaattactacacaggggtcagcagggatcagcacagtcgtcctcttttcccgagcataggaaaatcaacttttct 13126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 13589 - 13541
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||| | |||||| |||||||| |||||||    
T  13589 gaattaaaagatgaaattgaaatttgagaattaaggaaaaccagtttag 13541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 390 - 675
Target Start/End: Complemental strand, 11682 - 11389
Alignment:
Q  390 gatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagtt 481  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||  ||||||||||||| | |||  ||||       |||| ||| | ||||||||    
T  11682 gatcgaaaacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgatatcagtgtgcaaaacacgttt-ttattgtctcagtt 11584  T
Q  482 tgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcat 581  Q
    ||||||||||| |||  ||| |||||||||||| |||||  || ||||||| |||||||||||  | ||||| | ||||||||  ||| || |||||||     
T  11583 tgacaagtttaggtttcgaactgggtttaggtgccttcacgaaagttgtagatatggatgttatctgtcactcggctttggagaaactcgaattaagcac 11484  T
Q  582 ctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaatcaacttttct 675  Q
     |||| ||||| ||||||||||| ||| ||| |||| |||| | |||||| ||  ||||| || ||| ||  ||| |||||||||||||||||||    
T  11483 atagaactcaagatatgatcaaattactacacaggggtcagcagggatcagcacagtcgtcctcttttcccgagcataggaaaatcaacttttct 11389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 11841 - 11793
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  11841 gaattaaaagatgaaattgaaagctaagaattaaggaaaactagtttag 11793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 11893 - 11779
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    ||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||| |||||| |||||| |||||||| |||||||| ||||  |    
T  11893 cttaaaaagagtggataatcaagtaggttcacgaagaattagtgtttgaatgatagggtagtcatgg-agtgaagattagggtcgagtttggtgagttta 11795  T
Q  389 tgatcgaaaacggagt 404  Q
     | |||||||||||||    
T  11794 gggtcgaaaacggagt 11779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 2671 - 2785
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| || |||| |||||| ||| |||||| |||||| ||||  |    
T  2671 cttaaaaagagtggataatctggcaggttaacgaagaattagtgtttgaataatagggtgatgatgg-agtgaagattcgggttgggtttggcgagttta 2769  T
Q  389 tgatcgaaaacggagt 404  Q
     | |||||||||||||    
T  2770 gggtcgaaaacggagt 2785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 607
Target Start/End: Original strand, 3078 - 3172
Alignment:
Q  513 tgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatgatcaaaata 607  Q
    ||||||||| || ||||||| ||| |||||||| ||||||||||||||||| ||| |  ||||||| ||||| | ||||| ||||||| ||||||    
T  3078 tgtcttcatgaaagttgtagatatcgatgttagctttcactagcctttggatggagtctatttaagtatctataactcaagatatgatgaaaata 3172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 375 - 675
Target Start/End: Original strand, 19807649 - 19807957
Alignment:
Q  375 gtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gttt 466  Q
    ||||||||||||   ||||||||||||||||||||||  ||  |||||| |||||| ||||   |||||| ||||||||||||  ||||       ||||    
T  19807649 gtttggagagtattggatcgaaaacggagtcgaaaagatttttccaaaggcgaaattgcagttgaactgcaattttgctgtcaatgtgcaaaacgcgttt 19807748  T
Q  467 cttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggaggg 566  Q
     ||| | |||||||||||||||||||||||  ||| |||||||||||| ||||  ||| ||||||| |||||||||||  | ||||| | |||||||||     
T  19807749 -ttattgtctcagtttgacaagtttaagtttcgaactgggtttaggtgccttcgcaaaagttgtagatatggatgttatctgtcactcggctttggaggc 19807847  T
Q  567 acttgatttaagcatctagatctcaatatatgatcaaaataccacaaagggttcag-aaggatcaacaaggtcgtgctttttccctaagcttaggaaaat 665  Q
    ||| ||||||||||   ||| ||||| ||||||||||| ||| ||| | || |||| | |||||| ||  ||||| || ||| ||  ||| |||||||||    
T  19807848 actcgatttaagcacaaagaactcaagatatgatcaaattactacacaagggtcagcagggatcagcacagtcgtcctcttttcccgagcataggaaaat 19807947  T
Q  666 caacttttct 675  Q
    ||||||||||    
T  19807948 caacttttct 19807957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 293 - 622
Target Start/End: Original strand, 21321322 - 21321656
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaat-attagggttgagtttggagagtacatga 391  Q
    |||||||||| ||||| |||||||||  || | |||||  ||| ||||||||||| |||||   || | || ||||||||   ||||||||||||   ||    
T  21321322 aaaagagtggttaatcaggtaggttagtgatggattaacattttaatgatagggtgatcat---agggtatgattagggtcatgtttggagagtattgga 21321418  T
Q  392 tcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgt-------gcgtttcttactctctcagtttg 483  Q
    ||||| ||||||||||||||  |||||||||| ||||||||||||  |||||||||||||||||||  ||       |||||| | | | || |||||||    
T  21321419 tcgaacacggagtcgaaaagatttccccaaaggcgaaatcgcagctgaactgcgattttgctgtcagtgtgcaagacgcgttt-tcattgtcgcagtttg 21321517  T
Q  484 acaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatct 583  Q
    |||||||||||||  ||| |||||||||||| |||||  || ||||||| ||| |||||||  | |||||||   ||||||| ||| |||||| |||  |    
T  21321518 acaagtttaagtttcgaactgggtttaggtgccttcacgaaagttgtagatatagatgttatctgtcactaggaattggaggcactcgatttaggcacat 21321617  T
Q  584 agatctcaatatatgatcaaaataccacaaagggttcag 622  Q
    ||| |||||  |||||||||| ||| ||| |||| ||||    
T  21321618 agaactcaagttatgatcaaattactacacaggggtcag 21321656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 375 - 617
Target Start/End: Original strand, 22237305 - 22237554
Alignment:
Q  375 gtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgcgt------ttc 467  Q
    ||||||||||||   |||| |||||||||||||||||  |||||||||| ||||||| ||||  |||||||||||||||||||  ||||        ||     
T  22237305 gtttggagagtattggatcaaaaacggagtcgaaaagatttccccaaaggcgaaatcccagctgaactgcgattttgctgtcagtgtgcaacacgcattt 22237404  T
Q  468 ttactctctcagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggaggga 567  Q
    ||| | |||||||||||||| ||||||||  ||| |||||||||||| |||||  || ||||||| |||| ||||||  | ||||| | ||||||||| |    
T  22237405 ttattgtctcagtttgacaaatttaagtttcgaactgggtttaggtgccttcacgaaagttgtagatatgaatgttatttgtcactcggctttggaggca 22237504  T
Q  568 cttgatttaagcatctagatctcaatatatgatcaaaataccacaaaggg 617  Q
    ||  |||| ||||  |||| ||||| ||||||||||| ||| ||| ||||    
T  22237505 ctcaatttgagcacatagaactcaagatatgatcaaattactacacaggg 22237554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 15727756 - 15727628
Alignment:
Q  210 gatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttagtactttgaattaagnnnnnnngacttaaaaagagtggataatct 309  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||||| | | |||||||| ||         ||||||||||||||||||||     
T  15727756 gatgaatgaattaaaagatgaagttgaaagataagaattgaggaaaactagttttg-attttgaattgagtttttat-tcttaaaaagagtggataatcc 15727659  T
Q  310 ggtaggttaacgaagaattaatgtttgaatg 340  Q
    ||||||||||||||  | |||||||||||||    
T  15727658 ggtaggttaacgaatgactaatgtttgaatg 15727628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 622
Target Start/End: Original strand, 21326109 - 21326254
Alignment:
Q  477 cagtttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgattta 576  Q
    ||||||||||||||||||||  |||||||||||||||| |||||  || ||||||| ||| |||||||  | |||||||   ||||||| ||| ||||||    
T  21326109 cagtttgacaagtttaagtttcgaattgggtttaggtgccttcacgaaagttgtagatatagatgttatctgtcactaggaattggaggcactcgattta 21326208  T
Q  577 agcatctagatctcaatatatgatcaaaataccacaaagggttcag 622  Q
     |||  |||| |||||  |||||||||| ||| ||| |||| ||||    
T  21326209 ggcacatagaactcaagttatgatcaaattactacacaggggtcag 21326254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 162 - 352
Target Start/End: Complemental strand, 1683279 - 1683092
Alignment:
Q  162 ttaatatgatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaaactagt 261  Q
    |||||||| |||||  ||||| |||||| ||| ||| |||||| | | ||||||||||||||||||||||||||| |||| |||||| ||| |||||| |    
T  1683279 ttaatatgttgttgcggttatgatgtga-attttgatgagagactgatgatgaacgaattaaaagatgaagttgacatatgagaattaagg-aaactatt 1683182  T
Q  262 ttagtactttgaattaagnnnnnnngacttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatca 352  Q
    ||||   || ||||| ||       | ||| |||||| | ||  |||||||||||||| ||||||||| |||||||||||||| |||||||    
T  1683181 ttaggttttcgaattgag-tgtttagcctttaaaagattagacgatctggtaggttaaagaagaattagtgtttgaatgatagtgtaatca 1683092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 17883235 - 17883149
Alignment:
Q  169 gatgttgttgttattatgtgagattgtgaggagagatttacgatgaacgaattaaaagatgaagttgaaatatcagaattgaggaaa 255  Q
    |||||||||||||| ||||||||||||||  |||||||   || ||| |||||||||||||| ||||||  || ||||| |||||||    
T  17883235 gatgttgttgttatgatgtgagattgtgattagagattgctgacgaatgaattaaaagatgaggttgaaggatgagaatagaggaaa 17883149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 19862209 - 19862149
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaa 349  Q
    |||||||||  | ||||||  |||||||||||| |||||||||||||||||| ||||||||    
T  19862209 cttaaaaaggttagataattaggtaggttaacggagaattaatgtttgaatgttagggtaa 19862149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 19866846 - 19866786
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaa 349  Q
    |||||||||  | ||||||  |||||||||||| |||||||||||||||||| ||||||||    
T  19866846 cttaaaaaggttagataattaggtaggttaacggagaattaatgtttgaatgttagggtaa 19866786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 21326000 - 21326080
Alignment:
Q  375 gtttggagagtacatgatcgaaaacggagtcgaaaagggttccccaaa-gcgaaatcgcagcacaactgcgattttgctgt 454  Q
    ||||||||||||   ||||||| ||||||||||||||  || |||||| ||| |||||||||  |||||||||||||||||    
T  21326000 gtttggagagtattggatcgaacacggagtcgaaaagattttcccaaaggcggaatcgcagctgaactgcgattttgctgt 21326080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 26859384 - 26859444
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||||||||| |||||||||| ||||||||  ||||  |||||||||| ||||||    
T  26859384 aaaagagtggataatcgggtaggttaatgaagaattggtgttctaatgatagggaaatcat 26859444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 10454273 - 10454320
Alignment:
Q  302 gataatctggtaggttaacgaagaattaatgtttgaatgatagggtaa 349  Q
    |||||||||||||||||| |||||| || |||||| ||||||||||||    
T  10454273 gataatctggtaggttaatgaagaagtagtgtttggatgatagggtaa 10454320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 364761 - 364701
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  364761 aaaagagtggttaatcaggtaggttagtgatggattaacgttttaatgatagggtaatcat 364701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 17861454 - 17861494
Alignment:
Q  222 aaaagatgaagttgaaatatcagaattgaggaaaactagtt 262  Q
    |||||||||||| |||| || ||||||||||||||||||||    
T  17861454 aaaagatgaagtggaaagatgagaattgaggaaaactagtt 17861494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 22237150 - 22237198
Alignment:
Q  217 gaattaaaagatgaagttgaaatatcagaattgaggaaaactagtttag 265  Q
    ||||||||||||||| ||||||  | |||||| ||||||||||||||||    
T  22237150 gaattaaaagatgaaattgaaagttgagaattaaggaaaactagtttag 22237198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1405 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 500 - 622
Target Start/End: Complemental strand, 1427 - 1305
Alignment:
Q  500 aattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagcatctagatctcaatatatga 599  Q
    |||| ||||| | ||||||| | || ||||||| |||||||||||  |||||||||||||| ||||||||  ||||||| ||||||| ||||||||||||    
T  1427 aattaggttttgatgtcttcgtgaaagttgtagatatggatgttaaatttcactagcctttagagggactctatttaagtatctagaactcaatatatga 1328  T
Q  600 tcaaaataccacaaagggttcag 622  Q
    | ||||||| ||| |||| ||||    
T  1327 tgaaaatactacacaggggtcag 1305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 143137 - 143048
Alignment:
Q  177 tgttattatgtgagattgtgaggagagatttacgatgaacgaatt-aaaagatgaagttgaaatatcagaattgaggaaaactagtttagt 266  Q
    |||||| |||||| ||| ||| |||||||| | ||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  143137 tgttatgatgtga-attttgatgagagattgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagt 143048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 289 - 604
Target Start/End: Complemental strand, 1820 - 1499
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtaca 388  Q
    |||||||||||||||||||   ||||||| | ||| ||||| ||||  ||||||||| | ||||| |  || |  ||||||||   ||||||||||||      
T  1820 cttaaaaagagtggataatacagtaggttgatgaataattagtgttataatgataggttgatcatagg-gtaatgattagggtcatgtttggagagtatt 1722  T
Q  389 tgatcgaaaacggagtcgaaaagggttccccaaag-cgaaatcgcagcacaactgcgattttgctgtcaccgtgc-------gtttcttactctctcagt 480  Q
     ||||||||||| ||||||||||  ||||| |||| || |||||||||  |||||||||||||||||||  ||||       || | ||| | |||||||    
T  1721 ggatcgaaaacgtagtcgaaaagatttccctaaaggcggaatcgcagctgaactgcgattttgctgtcagtgtgcaaaaggcgtgt-ttattgtctcagt 1623  T
Q  481 ttgacaagtttaagttctgaattgggtttaggtgtcttcataaacgttgtagttatggatgttaggtttcactagcctttggagggacttgatttaagca 580  Q
    ||||||||||||||||  ||| ||| |||||||  |||||  || ||||||| ||| |||||||  | ||||| | |||| |||| |||  |||||||||    
T  1622 ttgacaagtttaagtttcgaactggatttaggtaccttcacgaaagttgtagatatagatgttatctgtcactcggctttagaggcactcaatttaagca 1523  T
Q  581 tctagatctcaatatatgatcaaa 604  Q
      |||| ||||| |||||||||||    
T  1522 catagaactcaagatatgatcaaa 1499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 18154 - 18097
Alignment:
Q  210 gatgaacgaattaaaa-gatgaagttgaaatatcagaattgaggaaaactagtttagt 266  Q
    |||||||||||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  18154 gatgaacgaattaaaaagatgaagttgaaagacgagaattgaggaaaactagtttagt 18097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 11436 - 11475
Alignment:
Q  310 ggtaggttaacgaagaattaatgtttgaatgatagggtaa 349  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  11436 ggtaggttaacggagaattaatgtttgaatgttagggtaa 11475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 14912 - 14806
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcatggaagtgaatattagggttgagtttggagagtacatgat 392  Q
    ||||||||| | |||  ||||||||||| ||  |||| ||||| ||||||||| ||||| | || ||||| ||||||||||||||||| ||||  | |||    
T  14912 aaaagagtgaacaattcggtaggttaacaaatgattagtgttttaatgataggttaatcgtaga-gtgaagattagggttgagtttggcgagtttaggat 14814  T
Q  393 cgaaaacg 400  Q
    ||||||||    
T  14813 cgaaaacg 14806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 7855 - 7795
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  7855 aaaagagtggttaatcaggtaggttagtgatggattaacgttttaatgatagggtaatcat 7795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 969 - 909
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  969 aaaagagtggttaatcgggtaggttagtgatggattaacgtttcaatgatagggtaatcat 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 8927 - 8867
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||| || ||| | ||||| |||| |||||||||||||||||    
T  8927 aaaagagtggttaatcaggtagggtagcgatggattaacgtttaaatgatagggtaatcat 8867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 17358 - 17418
Alignment:
Q  293 aaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaatcat 353  Q
    |||||||||| ||||| |||||||||  || | ||||| |||| |||||||||||||||||    
T  17358 aaaagagtggttaatcaggtaggttagagatggattaaagttttaatgatagggtaatcat 17418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 139273 - 139333
Alignment:
Q  289 cttaaaaagagtggataatctggtaggttaacgaagaattaatgtttgaatgatagggtaa 349  Q
    |||||||||  | ||||||  |||||||||||| ||||||||| |||||||| ||||||||    
T  139273 cttaaaaaggttagataattaggtaggttaacggagaattaatatttgaatgttagggtaa 139333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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