View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_12 (Length: 407)
Name: NF8975_low_12
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 10338696 - 10339075
Alignment:
| Q |
13 |
gagaggaagactgtgagagaatctctaatttcggcttatgacaaaaacgtagcaccaaggctaaaagctgaggtttctagcatggaggtgaacaacttca |
112 |
Q |
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| T |
10338696 |
gagaggaagactgtgagagaatctctaatttcagcttatgacaaaaacatagctccaaggctaaaagccgaggtttctagcatggaggtgaacaacttca |
10338795 |
T |
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| Q |
113 |
acaacatcacaaaagatgcttgcacaagtcagtgttcatgttctatctttataggnnnnnnnntccaaaaggaaaatattacccttttggttgctactta |
212 |
Q |
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| T |
10338796 |
acaacatcacaaaagattcttgcacaagtaagtgttcatgttctatctttatacgaaaaaaaatccaaaaggaaaatattacccttttggttaatactta |
10338895 |
T |
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| Q |
213 |
tttgttttaactcttacaatattttcttaataaattaatgcagggaatcaaataaatccagaacaatggtgtacaagctggtggtatcaattcactgtac |
312 |
Q |
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| T |
10338896 |
tttgttttaactcttactatattttcgtaataaattaatgcagggaatcaaataaatccagaacaatggtgtacaagctggtggtatcaattcactgtac |
10338995 |
T |
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| Q |
313 |
tattacaaaggggagtgagggaaagaagacatgaagcattcaataggctgagaatattccaagtcataagtgtagctttt |
392 |
Q |
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| T |
10338996 |
tattacaaaggggtgttagggaaagaaggcatgaagcattcaataggctgagaatattccaagtcataagtgtagctttt |
10339075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 24208145 - 24208010
Alignment:
| Q |
28 |
agagaatctctaatttcggcttatgacaaaaacgtagcaccaaggctaaaagctgaggtttctagcatggaggtgaacaacttcaacaacatcacaaaag |
127 |
Q |
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| T |
24208145 |
agagaatctcttatttctgtttgtgacaaaaacatagttacaaggctgaatgctgatgtttgcagcatggaggtgaacatctacaataacaacagaaaag |
24208046 |
T |
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| Q |
128 |
atgcttgcacaagtcagtgttcatgttctatcttta |
163 |
Q |
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| T |
24208045 |
atgcttgcactagtaagtgttcatgttctatcttta |
24208010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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