View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8975_low_14 (Length: 395)
Name: NF8975_low_14
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 51939443 - 51939817
Alignment:
| Q |
1 |
agttgatccatgaacgaacggaaacactaatattttttactctcttatttgaaatagcagatatccacagattaatatggtaggggtcaaggttttctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51939443 |
agttgatccatgaacgaacggaaacactaatattttttactctcttatttgaaatagcagatatccacagattaatatggtaggggtcaaggttttctga |
51939542 |
T |
|
| Q |
101 |
aatatctagagagaatttttggatggttgcactgttgagaagaagaagtaccctacatacaaagtcaatatagcgattttttgcttcctcaaagggaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51939543 |
aatatctagagagaatttttggatggttgcactgttgagaa---gaagtaccctacatacaaagtcaatatagcgattttttgcttcctcaaagggaaca |
51939639 |
T |
|
| Q |
201 |
gaaaaatgaagcaggttgtcactaaagcatagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51939640 |
gaaaaatgaagcaggttgtcactaaagcatagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttag |
51939739 |
T |
|
| Q |
301 |
taggaagaaaagagagaatgtgagcaataatacagtcagataggcggcttatgatgtcttgaccctcactggatttct |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51939740 |
taggaagaaaagagagaatgtgagcaataatacagtcagataggcggcttatgatgtcttgaccctcactggatttct |
51939817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 376
Target Start/End: Original strand, 51944464 - 51944813
Alignment:
| Q |
27 |
ctaatattttttactctcttatttgaaatagcagatatccacagattaatatggtaggggtcaaggttttctgaaatatctagagagaatttttggatgg |
126 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||||||| |||| ||||||||||| |||| || | | |||||| ||||| ||| ||||||||| |
|
|
| T |
51944464 |
ctaataatttttactctcttatttgaaacaacagatatccattgattgatatggtagggatcaaaattatgtagaatatccagagaaaatgtttggatgg |
51944563 |
T |
|
| Q |
127 |
ttgcactgttgagaagaagaagtaccctacatacaaagtcaatatagcgattttttgcttcctcaaagggaacagaaaaatgaagcagg----ttgtcac |
222 |
Q |
| |
|
||||| |||||||| ||| ||||||||| ||||||||| ||| |||| ||||| || |||| | | | || |||||| ||| |||| | |
|
|
| T |
51944564 |
ttgcagtgttgagattaagcagtaccctatatacaaagttgataaagcgggtttttcttttctcacatag----gtaagatgaagaaggatgattgtaat |
51944659 |
T |
|
| Q |
223 |
taaagcatagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtg |
322 |
Q |
| |
|
||| | ||| | ||||| |||| |||| |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| | |
|
|
| T |
51944660 |
caaaacttaggtctgtgagaaacatccatttgtatatccacctctgtgataaagcaccggtacgaactgcatatttagtaggaagaaaagaaagaatgcg |
51944759 |
T |
|
| Q |
323 |
agcaataatacagtcagataggcggcttatgatgtcttgaccctcactggattt |
376 |
Q |
| |
|
| | |||| | |||||| |||| |||||| || |||||||||||||||||||| |
|
|
| T |
51944760 |
accgataacaaagtcaggtaggtcgcttatcatatcttgaccctcactggattt |
51944813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 374
Target Start/End: Original strand, 37420356 - 37420501
Alignment:
| Q |
229 |
atagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||| |||| || || ||||||| | | || |||||||||| |||||||| ||||| |
|
|
| T |
37420356 |
atagttttgtgacaaacgtccacatgtatatccacctccgtgataaaacacttgtgcggactgcatcttcaatacgaagaaaagaaagaatgtgggcaat |
37420455 |
T |
|
| Q |
329 |
aatacagtcagataggcggcttatgatgtcttgaccctcactggat |
374 |
Q |
| |
|
||| || ||| |||| ||||||||| |||||||| |||||||| |
|
|
| T |
37420456 |
gataaagacaggtaggttgcttatgatatcttgaccagcactggat |
37420501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 34747437 - 34747525
Alignment:
| Q |
230 |
tagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaa |
318 |
Q |
| |
|
||||||||||| ||| ||||| | ||| ||||||||| ||||||| |||| ||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
34747437 |
tagttttgtgataaatgtccataggtatatccacctctttgataaaacactggtagaaactgcatccttagtaggaagaaaagaaagaa |
34747525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 366
Target Start/End: Original strand, 34755803 - 34755910
Alignment:
| Q |
259 |
tccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataatacagtcagataggcggcttatgatgtc |
358 |
Q |
| |
|
||||| ||| ||||||| | |||||||||||||| | ||||||||||||||| | ||||||| | ||||||| ||||| |||| |||||| | ||| |
|
|
| T |
34755803 |
tccacttctttgataaaacgctagtacgaactgcttccttagtaggaagaaaaaaaagaatgtaaccaataatgtggtcaggtaggttgcttatcaagtc |
34755902 |
T |
|
| Q |
359 |
ttgaccct |
366 |
Q |
| |
|
|||||||| |
|
|
| T |
34755903 |
ttgaccct |
34755910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University