View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8975_low_19 (Length: 347)

Name: NF8975_low_19
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8975_low_19
NF8975_low_19
[»] chr5 (2 HSPs)
chr5 (164-332)||(7427541-7427709)
chr5 (1-135)||(7427723-7427857)
[»] chr2 (3 HSPs)
chr2 (170-332)||(7982683-7982845)
chr2 (1-135)||(7982532-7982666)
chr2 (17-70)||(21011829-21011884)
[»] chr8 (5 HSPs)
chr8 (164-332)||(41521695-41521863)
chr8 (1-135)||(41521536-41521670)
chr8 (1-135)||(7487145-7487279)
chr8 (1-135)||(118786-118920)
chr8 (1-70)||(10053571-10053642)
[»] chr7 (5 HSPs)
chr7 (1-135)||(4168612-4168746)
chr7 (164-332)||(4168420-4168587)
chr7 (17-135)||(38407210-38407328)
chr7 (164-273)||(38407072-38407181)
chr7 (1-67)||(44114486-44114555)
[»] chr1 (5 HSPs)
chr1 (35-112)||(47560383-47560461)
chr1 (1-70)||(44978493-44978564)
chr1 (19-70)||(33794606-33794657)
chr1 (1-59)||(52741708-52741766)
chr1 (1-60)||(33941535-33941595)
[»] chr4 (5 HSPs)
chr4 (1-57)||(52980991-52981047)
chr4 (1-70)||(96513-96582)
chr4 (17-57)||(39591174-39591214)
chr4 (1-70)||(29686623-29686693)
chr4 (17-61)||(35789442-35789485)
[»] chr3 (1 HSPs)
chr3 (3-62)||(19622754-19622813)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-70)||(75964-76033)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 7427709 - 7427541
Alignment:
Q  164 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7427709 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaagataggagaaattaga 7427610  T
Q  264 aagcaaaactcnnnnnnnnttcctatcactctctctatgttatcttcttcttcttccatcactaattga 332  Q
    |||||||||||        |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  7427609 aagcaaaactcaaaaaaaattcctatcactctctctacgttatcttcttcttcttccatcactagttga 7427541  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7427857 - 7427723
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaa 100  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  7427857 ttcttctcctttcctgttcttcctcctgatcttaatcatcttcaacattgtacatataaaactcaaaaaatttcttcatcacaattagcaacaacatcaa 7427758  T
Q  101 ccttttcataaccataatcacctagatctcaattt 135  Q
    |||||||||||||||||||||||||||||||||||    
T  7427757 ccttttcataaccataatcacctagatctcaattt 7427723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 170 - 332
Target Start/End: Original strand, 7982683 - 7982845
Alignment:
Q  170 atcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaagcaa 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7982683 atcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaa 7982782  T
Q  270 aactcnnnnnnnnttcctatcactctctctatgttatcttcttcttcttccatcactaattga 332  Q
    |||||        ||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  7982783 aactcaaaaaaaattcttgtcactctctctacgttatcttcttcttcttccatcactaattga 7982845  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 7982532 - 7982666
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaa 100  Q
    ||||| || ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7982532 ttcttatcatttcctgttcttcatcttgatcttaatcatcttcaacattgttcatataaaacccaaaaaaattcttcatcacaattagcaacaacatcaa 7982631  T
Q  101 ccttttcataaccataatcacctagatctcaattt 135  Q
    |||||||||||||||||||||||||||||||||||    
T  7982632 ccttttcataaccataatcacctagatctcaattt 7982666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 21011884 - 21011829
Alignment:
Q  17 ttcttcctcttgatttttatcatcttcaaca--ttgttcatataaaacccaaaaaa 70  Q
    |||||||||||||| || |||||||||||||   ||||||| ||||||||||||||    
T  21011884 ttcttcctcttgatcttcatcatcttcaacactatgttcatgtaaaacccaaaaaa 21011829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 164 - 332
Target Start/End: Original strand, 41521695 - 41521863
Alignment:
Q  164 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 263  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41521695 ctcaacatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataactcaaagttgtattcttgtaaggtaggagaaattaga 41521794  T
Q  264 aagcaaaactcnnnnnnnnttcctatcactctctctatgttatcttcttcttcttccatcactaattga 332  Q
    || ||||||||        ||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  41521795 aatcaaaactcaaaaaaaattcttgtcactctctctacgttatcttcttcttcttccatcactaattga 41521863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 41521536 - 41521670
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaa 100  Q
    ||||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41521536 ttcttgtcctttcctgttcctcctcttgatcttaatcatcttcaacattgttcatataaaacccagaaaatttcttcatcacaattagcaacaacatcaa 41521635  T
Q  101 ccttttcataaccataatcacctagatctcaattt 135  Q
    |||||||||||||||||||||||||||||||||||    
T  41521636 ccttttcataaccataatcacctagatctcaattt 41521670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7487279 - 7487145
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaa 100  Q
    ||||||||||| |||| | |||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7487279 ttcttctccttccctgctattcctcttcatcttcatcaccttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagaaacaacatcaa 7487180  T
Q  101 ccttttcataaccataatcacctagatctcaattt 135  Q
    ||||||||||||||||| ||||   ||||||||||    
T  7487179 ccttttcataaccataaacaccccaatctcaattt 7487145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 118920 - 118786
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaa 100  Q
    ||||||||||| ||| || ||||| || || || |||| ||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  118920 ttcttctccttccctattattccttttcatcttcatcaccttcaacatttatcatataaaatccagaaaatttcttcatcacaattagcaacaacatcaa 118821  T
Q  101 ccttttcataaccataatcacctagatctcaattt 135  Q
    ||||||||||||||||| ||||   ||||||||||    
T  118820 ccttttcataaccataaacaccccaatctcaattt 118786  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10053642 - 10053571
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaaca--ttgttcatataaaacccaaaaaa 70  Q
    ||||||||||| | | |||||||||||||| || |||||||||||||   ||||||||||||||||||||||    
T  10053642 ttcttctccttccttattcttcctcttgatcttcatcatcttcaacactatgttcatataaaacccaaaaaa 10053571  T

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Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 4168746 - 4168612
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaa 100  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4168746 ttcttctcctttcctgttcttcctcttgatcttaatcatcttcaacattgttcatataaaacccagaaaatttcttcatcacaattagcaacaacatcaa 4168647  T
Q  101 ccttttcataaccataatcacctagatctcaattt 135  Q
    |||||||||||| ||||||||||||||||||||||    
T  4168646 ccttttcataactataatcacctagatctcaattt 4168612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 4168587 - 4168420
Alignment:
Q  164 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 263  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4168587 ctcaacatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 4168488  T
Q  264 aagcaaaactcnnnnnnnnttcctatcactctctctatgttatcttcttcttcttccatcactaattga 332  Q
    || ||||||||        ||| | || ||||||||| |||||||||||||||||||||||||||||||    
T  4168487 aatcaaaactc-aaaaaaattcttgtcgctctctctacgttatcttcttcttcttccatcactaattga 4168420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 38407328 - 38407210
Alignment:
Q  17 ttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccata 116  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38407328 ttcttcctcttgatcttcatcatcttcaacattgttcatataaaacccataaaatttcttcatcacaattagcaacaacatcaaccttttcataaccata 38407229  T
Q  117 atcacctagatctcaattt 135  Q
    ||||||   ||||||||||    
T  38407228 atcaccctaatctcaattt 38407210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 38407181 - 38407072
Alignment:
Q  164 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 263  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  38407181 ctcaacatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataacaacccaaagttgtatttttgtaaggtaagagaaattaga 38407082  T
Q  264 aagcaaaact 273  Q
    ||||||||||    
T  38407081 aagcaaaact 38407072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 44114555 - 44114486
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaa---cattgttcatataaaacccaaa 67  Q
    |||||||| || ||| |||||||||||||| || |||||||||||   || |||||||||||||||||||    
T  44114555 ttcttctctttccctattcttcctcttgatcttcatcatcttcaacaccaatgttcatataaaacccaaa 44114486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 47560383 - 47560461
Alignment:
Q  35 atcatcttcaa-cattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataac 112  Q
    ||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  47560383 atcatcttcaagcgttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacatcaaccttttcataac 47560461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44978564 - 44978493
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaaca--ttgttcatataaaacccaaaaaa 70  Q
    ||||||||||| ||| |||||||||||||| || |||||||||||||   ||||||||||||||||||||||    
T  44978564 ttcttctccttccctattcttcctcttgatcttcatcatcttcaacactatgttcatataaaacccaaaaaa 44978493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 33794606 - 33794657
Alignment:
Q  19 cttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaa 70  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||| ||||    
T  33794606 cttcctcttgatctttatcatcttcaacattgatcatataaaatccagaaaa 33794657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52741708 - 52741766
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataa 59  Q
    ||||| ||||| ||| |||||||||||||| || ||||||||||||||| |||||||||    
T  52741708 ttcttttccttccctattcttcctcttgatcttcatcatcttcaacattattcatataa 52741766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33941535 - 33941595
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacat-tgttcatataaa 60  Q
    |||||||||||   |||||||||||||||| || |||||||| ||||| ||||||||||||    
T  33941535 ttcttctccttcaatgttcttcctcttgatcttcatcatcttaaacatatgttcatataaa 33941595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 52981047 - 52980991
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatat 57  Q
    ||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||    
T  52981047 ttcttctccttccctattcttcctcttgatcttcatcatcttcaacattgttcatat 52980991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 96582 - 96513
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaa 70  Q
    ||||||||||| ||  |||||||| ||||| || ||||||||||||||||||| ||||||||||| ||||    
T  96582 ttcttctccttcccaattcttcctgttgatcttcatcatcttcaacattgttcttataaaacccagaaaa 96513  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 39591174 - 39591214
Alignment:
Q  17 ttcttcctcttgatttttatcatcttcaacattgttcatat 57  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  39591174 ttcttcctcttgatcttcatcatcttcaacattgttcatat 39591214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29686623 - 29686693
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacatt--gttcatataaaacccaaaaaa 70  Q
    ||||||||||| ||| ||||||||||| || || ||||||| ||||| |  |||||||||||||||||||||    
T  29686623 ttcttctccttccctattcttcctcttaatcttcatcatct-caacactatgttcatataaaacccaaaaaa 29686693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 35789485 - 35789442
Alignment:
Q  17 ttcttcctcttgatttttatcatcttcaacattgttcatataaaa 61  Q
    ||||||||||| || || |||||||||||||||||||||||||||    
T  35789485 ttcttcctctt-atcttcatcatcttcaacattgttcatataaaa 35789442  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 19622813 - 19622754
Alignment:
Q  3 cttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaac 62  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||||||||||||| ||||    
T  19622813 cttctccttccctattcttcctcttgatcttcatcatcttcaacattgttcatatgaaac 19622754  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 75964 - 76033
Alignment:
Q  1 ttcttctcctttcctgttcttcctcttgatttttatcatcttcaacattgttcatataaaacccaaaaaa 70  Q
    ||||||||||| ||  ||| |||| ||||| || ||||||||||||||||||| ||||||||||| ||||    
T  75964 ttcttctccttccccattcatcctgttgatgttcatcatcttcaacattgttcttataaaacccataaaa 76033  T

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