View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_22 (Length: 318)
Name: NF8975_low_22
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 49521155 - 49520848
Alignment:
| Q |
1 |
ttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaagacaacatcattgatag |
100 |
Q |
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| T |
49521155 |
ttagatccattgatggtggtgctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaagacaacatcattgatag |
49521056 |
T |
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| Q |
101 |
aagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatggttggcattca |
200 |
Q |
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| T |
49521055 |
aagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatggttggcattca |
49520956 |
T |
|
| Q |
201 |
actgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcattagcaaaattgaagccggagagaggtttgtcg |
300 |
Q |
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| T |
49520955 |
actgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcattagcaaaattgaagccggagagaggtttgtcg |
49520856 |
T |
|
| Q |
301 |
tgtctgtg |
308 |
Q |
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||| |||| |
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| T |
49520855 |
tgtatgtg |
49520848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 69 - 292
Target Start/End: Complemental strand, 49509941 - 49509718
Alignment:
| Q |
69 |
cttgttagcggaaaagacaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagt |
168 |
Q |
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| T |
49509941 |
cttgttactggaaaagataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagt |
49509842 |
T |
|
| Q |
169 |
atttcctagggagttcctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcat |
268 |
Q |
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| T |
49509841 |
attttctaggtagttcatatggttggaaatcgtctgatattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgt |
49509742 |
T |
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| Q |
269 |
tagcaaaattgaagccggagagag |
292 |
Q |
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|||||| |||||||| |||||||| |
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| T |
49509741 |
tagcaagattgaagctggagagag |
49509718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 44662644 - 44662746
Alignment:
| Q |
87 |
aacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcct |
186 |
Q |
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||||| || ||||| || ||||||||||| ||||| |||||||| ||| | ||||| || |||||||||||||||||||| |||||||| || |||| || |
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| T |
44662644 |
aacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatatttccttggaagttgct |
44662743 |
T |
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| Q |
187 |
atg |
189 |
Q |
| |
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||| |
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| T |
44662744 |
atg |
44662746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 2416399 - 2416326
Alignment:
| Q |
102 |
agcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcct |
175 |
Q |
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|||||||||||||| ||||| |||||||| || | ||||| ||||||||||| |||||||||||||||||||| |
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| T |
2416399 |
agcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcct |
2416326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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