View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_23 (Length: 310)
Name: NF8975_low_23
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 18966850 - 18967136
Alignment:
| Q |
17 |
aaatataaagtaatttatagaactgagttttacannnnnnnatgtatataccttcacagtcataaatgtgaaattgttggcatatccttctgtgaactta |
116 |
Q |
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| T |
18966850 |
aaatataaagtaatttatagaattgagtattacatttttctatgtatataccttcacagtcagaaatgtgaaattgttggcatatccttgtgtgaactta |
18966949 |
T |
|
| Q |
117 |
gaacttgtttggattgacttatttcagattatctactagtaaatacatgtgagacagtttgaatagtttgtgatacatgtctatcaagaggtaatatttg |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||| ||||||||| || ||||||||||||| ||||||||| |
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| T |
18966950 |
gaacttgtttggattcacttatttcagattatctactagtaagcacgtgtgatacagtttgaacagtttgtgacacgtgtctatcaagagctaatatttg |
18967049 |
T |
|
| Q |
217 |
atactagaaaattggactatccgaaaacaatggaggaggacattgcacaacatctgcttaatgacggtcatgttaccacaggttctg |
303 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |
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| T |
18967050 |
ttactggaaaattggactatccaaaaacaatggaggaggacattgcacaacatctgcttaatgacgatcatgttacaacagcttctg |
18967136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 18950671 - 18950558
Alignment:
| Q |
58 |
atgtatataccttcacagtcataaatgtgaaattgttggcatatccttctgtgaacttagaacttgtttggattgacttatttcagattatctactagta |
157 |
Q |
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| T |
18950671 |
atgtatataccttcacagtcagaaatgtgaaattgttggcatatccttgtgtgaacttagaacttgtttggattcactta-ttcagattatctactagta |
18950573 |
T |
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| Q |
158 |
aatacatgtgagaca |
172 |
Q |
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| T |
18950572 |
agcacgtgtgagaca |
18950558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 18950555 - 18950465
Alignment:
| Q |
213 |
tttgatactagaaaattggactatccgaaaacaatggaggaggacattgcacaacatctgcttaatgacggtcatgttaccacaggttctg |
303 |
Q |
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| T |
18950555 |
tttgatactggaaaattggattatccaaaaacaatagaggaggacattgcacaacatctgcttaatgacgatcatgttacaacagcttctg |
18950465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 18018610 - 18018705
Alignment:
| Q |
16 |
caaatataaagtaatttatagaactgagttttacannnnnnnatgtatataccttcacagtcataaatgtgaaattgttggcatatccttctgtgaac |
113 |
Q |
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||||||||||||||||||||||||| | | ||||| || ||||||||| ||||| | |||||||||||| ||||||||||||| ||||||| |
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| T |
18018610 |
caaatataaagtaatttatagaactaaatattacatttttttat--atatacctttacagtaagaaatgtgaaattattggcatatccttgtgtgaac |
18018705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 11782961 - 11782993
Alignment:
| Q |
121 |
ttgtttggattgacttatttcagattatctact |
153 |
Q |
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| T |
11782961 |
ttgtttggattgacttatttgagattatctact |
11782993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 30331904 - 30331871
Alignment:
| Q |
120 |
cttgtttggattgacttatttcagattatctact |
153 |
Q |
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| T |
30331904 |
cttgtttggattgacttatttcagcttatctact |
30331871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 26866464 - 26866432
Alignment:
| Q |
122 |
tgtttggattgacttatttcagattatctacta |
154 |
Q |
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| T |
26866464 |
tgtttggattgacttatttcagcttatctacta |
26866432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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