View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_25 (Length: 282)
Name: NF8975_low_25
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 1702359 - 1702611
Alignment:
| Q |
13 |
atactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctattctacacaacatcatgcctaccaatgttatcacccacccactcaa |
112 |
Q |
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| T |
1702359 |
atactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctactctacacaacatcatgcctaccaatgttatcacccacccactcaa |
1702458 |
T |
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| Q |
113 |
aagttgtatctctcaagacacgtcacctttcatgagtcactcttt-caattttattgaatctttatgcctcgtccacgtcttctattttaaattcaaact |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702459 |
aagttgtatctctcaagacacgtcacctttcatgagtcactctttccatttttattgaatctttatgcctcgtccacgtcttctattttaaattcaaact |
1702558 |
T |
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| Q |
212 |
caaacactaacaagcactttccttctcatcatcctcttattattcaacacctt |
264 |
Q |
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| T |
1702559 |
caaacactagcaaacactttccttctcatcatcctcttattattcaacacctt |
1702611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 26592018 - 26591960
Alignment:
| Q |
74 |
caacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagaca |
132 |
Q |
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|||||||||||||||||||| || || || ||||||||||| || |||||||| ||||| |
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| T |
26592018 |
caacatcatgcctaccaatgctaccatcctcccactcaaaaattatatctctccagaca |
26591960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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