View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_26 (Length: 273)
Name: NF8975_low_26
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 35881817 - 35882074
Alignment:
| Q |
1 |
acttacaaattcttgatctctctggaaattctctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35881817 |
acttacaaattcttgatctctctggaaattctctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaag |
35881916 |
T |
|
| Q |
101 |
aaacaaattcggaggaagcatcaccattgagttgaacaataaaacctcaaccattcaaaaccttaatctctcacacaacaggttcaccaacgttgctcaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35881917 |
aaacaaattcggaggaagcatcaccattgagttgaacaataaaacctcaaccattcaaaaccttaatctctcacacaacaggttcaccaacgttgctcaa |
35882016 |
T |
|
| Q |
201 |
ctctctagcttccaaaaccttaaaatcctcgacctttctcacaacaacttaagagcac |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882017 |
ctctctagcttccaaaaccttaaaatcctcgacctttctcacaacaacttaagagcac |
35882074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 24456018 - 24456275
Alignment:
| Q |
1 |
acttacaaattcttgatctctctggaaattctctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456018 |
acttacaaattcttgatctctctggaaattctctacaaggccatgtaccaagctggttttggtctagtttttcatccttattagaaataaacctctcaag |
24456117 |
T |
|
| Q |
101 |
aaacaaattcggaggaagcatcaccattgagttgaacaataaaacctcaaccattcaaaaccttaatctctcacacaacaggttcaccaacgttgctcaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456118 |
aaacaaattcggaggaagcatcaccattgagttgaacaataaaacctcaaccattcaaaaccttaatctctcacacaacaggttcaccaacgttgctcaa |
24456217 |
T |
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| Q |
201 |
ctctctagcttccaaaaccttaaaatcctcgacctttctcacaacaacttaagagcac |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24456218 |
ctctctagcttccaaaaccttaaaatcctcgacctttctcacaacaacttaagagcac |
24456275 |
T |
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