View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8975_low_30 (Length: 264)

Name: NF8975_low_30
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8975_low_30
NF8975_low_30
[»] chr6 (11 HSPs)
chr6 (10-246)||(11170524-11170757)
chr6 (10-225)||(11209367-11209579)
chr6 (10-225)||(11275929-11276141)
chr6 (10-244)||(11161093-11161324)
chr6 (10-244)||(11196679-11196910)
chr6 (13-244)||(11156226-11156454)
chr6 (10-244)||(11199844-11200075)
chr6 (121-225)||(11241511-11241615)
chr6 (79-224)||(11132970-11133112)
chr6 (10-69)||(11241427-11241486)
chr6 (10-226)||(11314714-11314927)
[»] scaffold1207 (1 HSPs)
scaffold1207 (10-225)||(863-1075)
[»] chr7 (1 HSPs)
chr7 (174-238)||(8581662-8581726)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 11170757 - 11170524
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||    
T  11170757 ggtggtggtactttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccactggaggagacactcacctcgggggacaagactttg 11170658  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    ||||||||||   ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  11170657 ataatgcaat---ggtgaaccattttgtgaaagagttcttgagaaaacataaactcgacattagtggagatccaagagccattaggaggctgaagactgc 11170561  T
Q  210 ttgcgagagagcaaaatgtacactttcatccaataat 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  11170560 ttgcgagagagcaaaatgtacactttcatccaataat 11170524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 11209579 - 11209367
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11209579 ggtggtggtactttggacgtgtctgttctcacatttgaggatggtgatatcaatgttaaggctattgcaggagacactcacctcgggggacaagactttg 11209480  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    |||||||   |||||||||||||||||||||| |||||||||| ||| | ||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  11209479 ataatgc---aatggtgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatccaagagcccttaggaggctgaagactgc 11209383  T
Q  210 ttgcgagagagcaaaa 225  Q
    ||||||||||||||||    
T  11209382 ttgcgagagagcaaaa 11209367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 11276141 - 11275929
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  11276141 ggtggtggtactttggacgtgtctgttctcacttttgagaatggtgatatcaatgttaaggccattggaggagacactcacctcgggggacaagactttg 11276042  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    |||||||   |||||||||||||||||||||| |||||||||| |||||||||   ||||| |||||| ||||||||||| |||||||||||||||||||    
T  11276041 ataatgc---aatggtgaaccattttgtgaaagagttcttgaggaagcataaaaatgacattagtggagatccaagagccattaggaggctgaagactgc 11275945  T
Q  210 ttgcgagagagcaaaa 225  Q
    ||||||||||| ||||    
T  11275944 ttgcgagagagtaaaa 11275929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 11161324 - 11161093
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||  |||||||||||||||    
T  11161324 ggtggtggtactttggacgtgtctattctcacatttgagattggtgctatcaatgttaaggcgattgcaggagacactcaccttaggggacaagactttg 11161225  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    |||||   | |||||||||||||||||||||| |||||| ||| ||| ||||| ||||||| |||||| |||||||||||||||||||| ||||  ||||    
T  11161224 ataat---acaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaactctgc 11161128  T
Q  210 ttgcgagagagcaaaatgtacactttcatccaata 244  Q
    |||||||| ||||||| | | |||||| |||||||    
T  11161127 ttgcgagaaagcaaaaaggatactttcttccaata 11161093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 11196910 - 11196679
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  11196910 ggtggtggtactctggacgtgtccattctcacatttgagaacggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttg 11196811  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    |||||   | |||||||||||||||||||||| |||||| ||| ||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| ||||    
T  11196810 ataat---acaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgc 11196714  T
Q  210 ttgcgagagagcaaaatgtacactttcatccaata 244  Q
    |||||||| ||||||| | | |||||| |||||||    
T  11196713 ttgcgagaaagcaaaaaggatactttcttccaata 11196679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 11156454 - 11156226
Alignment:
Q  13 ggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgata 112  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  11156454 ggtggtactttggacgtgtccattctcacatttgagaaaggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttgata 11156355  T
Q  113 atgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttg 212  Q
    ||   | |||||||||||||||||||||  |||||| ||| ||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| |||||||    
T  11156354 at---acaatggtgaaccattttgtgaatgagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttg 11156258  T
Q  213 cgagagagcaaaatgtacactttcatccaata 244  Q
    ||||| ||||||| | | |||||| |||||||    
T  11156257 cgagaaagcaaaaaggatactttcttccaata 11156226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 11200075 - 11199844
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  11200075 ggtggtggtactctggatgtgtccattctcacatttgagaatggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttg 11199976  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    |||||   | |||||||||||||||||||||| |||||| ||| ||| ||||| ||||||| |||||| ||||||||||||||||||||  |||| ||||    
T  11199975 ataat---acaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggtagaagtctgc 11199879  T
Q  210 ttgcgagagagcaaaatgtacactttcatccaata 244  Q
    |||||||| ||||||| | | |||||| |||||||    
T  11199878 ttgcgagaaagcaaaaaggatactttcttccaata 11199844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 11241511 - 11241615
Alignment:
Q  121 atggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagag 220  Q
    ||||||||||||||||||||| |||||| ||| ||| ||||| ||||||| ||| || |||||||||||||||||||| ||||| |||||||||||| ||    
T  11241511 atggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtagagatccaagagcccttaggaggttgaagtctgcttgcgagaaag 11241610  T
Q  221 caaaa 225  Q
    |||||    
T  11241611 caaaa 11241615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 11133112 - 11132970
Alignment:
Q  79 ggagacactcacctcgggggacaagactttgataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaa 178  Q
    ||||| |||||||||||||||||||||||||||||    | ||||||||||||||| |||||| |||||||||| ||||||||| | ||||| ||||||     
T  11133112 ggagatactcacctcgggggacaagactttgataa---cacaatggtgaaccatttcgtgaaagagttcttgaggaagcataaaattgacattagtggag 11133016  T
Q  179 atccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 224  Q
    ||| || |||||||||  || ||||| |||| || |||| ||||||    
T  11133015 atcgaaaagcccttagacggttgaagtctgcatgtgagaaagcaaa 11132970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 11241427 - 11241486
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaag 69  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||    
T  11241427 ggtggtggtactctggacgtgtccattctcacatttgagaatggtgctatcaatgttaag 11241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 11314714 - 11314927
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||  ||||| |||| | |  |||  |||||||||||||| ||||||||||||||      
T  11314714 ggtggcggtactttggatgtgtctattctcacacttgagaatggtgccatcaaagttagggccgttggcggagacactcaccttgggggacaagacttca 11314813  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    |||||   | |||||||||  |||||||| ||  ||||  ||  | | ||||| | ||||| |||||| ||  || | ||||||||||| ||||| | ||    
T  11314814 ataat---acaatggtgaaatattttgtggaagtgttccggaagaggtataaaatagacattagtggagatttaacatcccttaggaggttgaagtcagc 11314910  T
Q  210 ttgcgagagagcaaaat 226  Q
    |||||||| ||||||||    
T  11314911 ttgcgagaaagcaaaat 11314927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 1075 - 863
Alignment:
Q  10 ggtggtggtactttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttg 109  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||    
T  1075 ggtggtggtactttggacgtgtctgttctcaaatttgagaatggtgatatcaatgttaaggctattgtaggagacactcacctcagggggcaagactttg 976  T
Q  110 ataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgc 209  Q
    |||| ||   ||||||||||||||||||||||  |||||| || ||| ||||| ||||||| |||||| ||||||||||| |||||||||||||||||||    
T  975 ataacgc---aatggtgaaccattttgtgaaagtgttcttaaggaagtataaaatcgacattagtggagatccaagagccgttaggaggctgaagactgc 879  T
Q  210 ttgcgagagagcaaaa 225  Q
    ||| |||||| |||||    
T  878 ttgtgagagatcaaaa 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 8581726 - 8581662
Alignment:
Q  174 tggaaatccaagagcccttaggaggctgaagactgcttgcgagagagcaaaatgtacactttcat 238  Q
    ||||||||||| |||| |||| ||| ||| ||||||||| |||||||| ||| | ||||||||||    
T  8581726 tggaaatccaaaagccattagaaggttgaggactgcttgtgagagagcgaaaaggacactttcat 8581662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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