View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8975_low_32 (Length: 252)
Name: NF8975_low_32
Description: NF8975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8975_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3265976 - 3265739
Alignment:
| Q |
1 |
ggagaacactctcaggttccaagccaataattcttgtaatgatctaatcttcactaagaggattacctatgaggagcatctggtggatgtggtaaaattc |
100 |
Q |
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|||| |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3265976 |
ggagcacactcccaagttccaagtcaataattcttgtaatgatctaatcttcactaagaggattacatatgaggagcatctggtggatgtggtaaaattt |
3265877 |
T |
|
| Q |
101 |
ttgctcttacgagtgggaggtggaacccgtcatgtgcaagggtagagttttggggtgttggcggagtcaggttgttgtgctttaggatgcttggtgggac |
200 |
Q |
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||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
3265876 |
ttgctcttacgagtggggggtggaacccaccatgtgcaaaggtagagttttggggtgttggcggagtcgggttgctgtgctttaggatgcttggtgggac |
3265777 |
T |
|
| Q |
201 |
gctttcgattatcctcttaggaatagttatgtgatgtc |
238 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
3265776 |
gctttcgattctcctcttaggaatagttatgtgatgtc |
3265739 |
T |
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